Kenji Mizuguchi

According to our database, Kenji Mizuguchi authored at least 31 papers between 1998 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Attention network for predicting T-cell receptor-peptide binding can associate attention with interpretable protein structural properties.

Kyohei Koyama, Kosuke Hashimoto, Chioko Nagao, Kenji Mizuguchi

Frontiers Bioinform., May, 2023

Toward the Construction of a Knowledge Graph from Japanese Food Ontology for the Prevention of Frailty.

Chihiro Higuchi, Agustin Martin-Morales, Ai Oya, Mai Inoue, Misako Ikkai, Kenji Mizuguchi, Michihiro Araki

Proceedings of the Workshop, 2023

2022

Integrative Network Modeling Highlights the Crucial Roles of Rho-GDI Signaling Pathway in the Progression of non-Small Cell Lung Cancer.

Saransh Gupta, Haswanth Vundavilli, Rodolfo S. Allendes Osorio, Mari N. Itoh, Attayeb Mohsen, Aniruddha Datta, Kenji Mizuguchi, Lokesh P. Tripathi

IEEE J. Biomed. Health Informatics, 2022

Snaq: A Dynamic Snakemake Pipeline for Microbiome Data Analysis With QIIME2.

Attayeb Mohsen, Yi-An Chen, Rodolfo S. Allendes Osorio, Chihiro Higuchi, Kenji Mizuguchi

Frontiers Bioinform., 2022

TargetMine 2022: a new vision into drug target analysis.

Yi-An Chen, Rodolfo S. Allendes Osorio, Kenji Mizuguchi

Bioinform., 2022

2019

Integrative Analysis of Multi-Omics Data.

Lokesh P. Tripathi, Tsuyoshi Esaki, Mari N. Itoh, Yi-An Chen, Kenji Mizuguchi

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 3, 2019

Network-Based Analysis of Host-Pathogen Interactions.

Lokesh P. Tripathi, Yi-An Chen, Kenji Mizuguchi, Eiji Morita

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 3, 2019

Network-Based Analysis for Biological Discovery.

Lokesh P. Tripathi, Yi-An Chen, Kenji Mizuguchi, Yoichi Murakami

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 3, 2019

Computational Model To Predict the Fraction of Unbound Drug in the Brain.

Tsuyoshi Esaki, Rikiya Ohashi, Reiko Watanabe, Yayoi Natsume-Kitatani, Hitoshi Kawashima, Chioko Nagao, Kenji Mizuguchi

J. Chem. Inf. Model., 2019

Assessing drug target suitability using TargetMine.

Yi-An Chen, Erika Yogo, Naoko Kurihara, Tomoshige Ohno, Chihiro Higuchi, Masatomo Rokushima, Kenji Mizuguchi

F1000Research, 2019

CLINE: a web-tool for the comparison of biological dendrogram structures.

Rodolfo S. Allendes Osorio, Lokesh P. Tripathi, Kenji Mizuguchi

BMC Bioinform., 2019

Impact of quality trimming on the efficiency of reads joining and diversity analysis of Illumina paired-end reads in the context of QIIME1 and QIIME2 microbiome analysis frameworks.

Attayeb Mohsen, Jonguk Park, Yi-An Chen, Hitoshi Kawashima, Kenji Mizuguchi

BMC Bioinform., 2019

2016

Integration of Ligand and Structure Based Approaches for CSAR-2014.

Philip Prathipati, Kenji Mizuguchi

J. Chem. Inf. Model., 2016

Improved pose and affinity predictions using different protocols tailored on the basis of data availability.

Philip Prathipati, Chioko Nagao, Shandar Ahmad, Kenji Mizuguchi

J. Comput. Aided Mol. Des., 2016

An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework.

Yi-An Chen, Lokesh P. Tripathi, Kenji Mizuguchi

Database J. Biol. Databases Curation, 2016

2015

PoSSuM v.2.0: data update and a new function for investigating ligand analogs and target proteins of small-molecule drugs.

Jun-Ichi Ito, Kazuyoshi Ikeda, Kazunori D. Yamada, Kenji Mizuguchi, Kentaro Tomii

Nucleic Acids Res., 2015

Integration of Disease Entries Across OMIM, Orphanet, and a Proprietary Knowledge Base.

Maori Ito, Shin-ichi Nakagawa, Kenji Mizuguchi, Takashi Okumura

Proceedings of the Current Approaches in Applied Artificial Intelligence, 2015

2014

Homology-based prediction of interactions between proteins using Averaged One-Dependence Estimators.

Yoichi Murakami, Kenji Mizuguchi

BMC Bioinform., 2014

2013

Toxygates: interactive toxicity analysis on a hybrid microarray and linked data platform.

Johan Nyström-Persson, Yoshinobu Igarashi, Maori Ito, Mizuki Morita, Noriyuki Nakatsu, Hiroshi Yamada, Kenji Mizuguchi

Bioinform., 2013

2012

An Open Framework for Extensible Multi-stage Bioinformatics Software.

Gabriel Keeble-Gagnère, Johan Nyström-Persson, Matthew I. Bellgard, Kenji Mizuguchi

Proceedings of the Pattern Recognition in Bioinformatics, 2012

2011

Prediction of dinucleotide-specific RNA-binding sites in proteins.

Michael Fernández, Yutaro Kumagai, Daron M. Standley, Akinori Sarai, Kenji Mizuguchi, Shandar Ahmad

BMC Bioinform., 2011

2010

CCRXP: exploring clusters of conserved residues in protein structures.

Shandar Ahmad, Ozlem Keskin, Kenji Mizuguchi, Akinori Sarai, Ruth Nussinov

Nucleic Acids Res., 2010

Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical membrane proteins.

Shandar Ahmad, Yumlembam Hemjit Singh, Yogesh Paudel, Takaharu Mori, Yuji Sugita, Kenji Mizuguchi

BMC Bioinform., 2010

Applying the Naïve Bayes classifier with kernel density estimation to the prediction of protein-protein interaction sites.

Yoichi Murakami, Kenji Mizuguchi

Bioinform., 2010

2007

Environment specific substitution tables for thermophilic proteins.

Kenji Mizuguchi, M. Sele, Maria Vittoria Cubellis

BMC Bioinform., 2007

2005

Amino-Acid Substitutions In Membrane Proteins: Applications To Homology Recognition And Comparative Modelling.

Younes Mokrab, Kenji Mizuguchi

BMC Bioinform., 2005

2004

HOMSTRAD: recent developments of the Homologous Protein Structure Alignment Database.

Lucy A. Stebbings, Kenji Mizuguchi

Nucleic Acids Res., 2004

2002

The SWIB and the MDM2 domains are homologous and share a common fold.

Riccardo Bennett-Lovsey, Sarah E. Hart, Hiroki Shirai, Kenji Mizuguchi

Bioinform., 2002

2001

HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families.

Paul I. W. de Bakker, Alex Bateman, David F. Burke, Ricardo Núñez Miguel, Kenji Mizuguchi, Jiye Shi, Hiroki Shirai, Tom L. Blundell

Bioinform., 2001

2000

Analysis of conservation and substitutions of secondary structure elements within protein superfamilies.

Kenji Mizuguchi, Tom L. Blundell

Bioinform., 2000

1998

JOY: protein sequence-structure representation and analysis.

Kenji Mizuguchi, Charlotte M. Deane, Tom L. Blundell, Mark S. Johnson, John P. Overington

Bioinform., 1998