Kengo Kinoshita

According to our database, Kengo Kinoshita authored at least 34 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

COXPRESdb v8: an animal gene coexpression database navigating from a global view to detailed investigations.

Takeshi Obayashi, Shun Kodate, Himiko Hibara, Yuki Kagaya, Kengo Kinoshita

Nucleic Acids Res., January, 2023

Statistical Modeling of Subjective Sleep Quality.

Siwalee Choilek, Akihiro Karashima, Ikuko N. Motoike, Norihiro Katayama, Kengo Kinoshita, Mitsuyuki Nakao

Proceedings of the 45th Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2023

2021

jMorp updates in 2020: large enhancement of multi-omics data resources on the general Japanese population.

Shu Tadaka, Eiji Hishinuma, Shohei Komaki, Ikuko N. Motoike, Junko Kawashima, Daisuke Saigusa, Jin Inoue, Jun Takayama, Yasunobu Okamura, Yuichi Aoki, Matsuyuki Shirota, Akihito Otsuki, Fumiki Katsuoka, Atsushi Shimizu, Gen Tamiya, Seizo Koshiba, Makoto Sasaki, Masayuki Yamamoto, Kengo Kinoshita

Nucleic Acids Res., 2021

2020

A genotype imputation method for de-identified haplotype reference information by using recurrent neural network.

Kaname Kojima, Shu Tadaka, Fumiki Katsuoka, Gen Tamiya, Masayuki Yamamoto, Kengo Kinoshita

PLoS Comput. Biol., 2020

Theoretical characterisation of strand cross-correlation in ChIP-seq.

Hayato Anzawa, Hitoshi Yamagata, Kengo Kinoshita

BMC Bioinform., 2020

2019

COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference.

Takeshi Obayashi, Yuki Kagaya, Yuichi Aoki, Shu Tadaka, Kengo Kinoshita

Nucleic Acids Res., 2019

Relationship between Dynamics of Physiological Signals and Subjective Quality of Life and Its Lifestyle Dependency.

Ryota Amano, Akihiro Karashima, Ikuko N. Motoike, Norihiro Katayama, Kengo Kinoshita, Mitsuyuki Nakao

Proceedings of the 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2019

2018

jMorp: Japanese Multi Omics Reference Panel.

Shu Tadaka, Daisuke Saigusa, Ikuko N. Motoike, Jin Inoue, Yuichi Aoki, Matsuyuki Shirota, Seizo Koshiba, Masayuki Yamamoto, Kengo Kinoshita

Nucleic Acids Res., 2018

De novo profile generation based on sequence context specificity with the long short-term memory network.

Kazunori D. Yamada, Kengo Kinoshita

BMC Bioinform., 2018

Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data.

Yasunobu Okamura, Kengo Kinoshita

BMC Bioinform., 2018

2017

Security controls in an integrated Biobank to protect privacy in data sharing: rationale and study design.

Takako Takai-Igarashi, Kengo Kinoshita, Masao Nagasaki, Soichi Ogishima, Naoki Nakamura, Sachiko Nagase, Satoshi Nagaie, Tomo Saito, Fuji Nagami, Naoko Minegishi, Yoichi Suzuki, Kichiya Suzuki, Hiroaki Hashizume, Shinichi Kuriyama, Atsushi Hozawa, Nobuo Yaegashi, Shigeo Kure, Gen Tamiya, Yoshio Kawaguchi, Hiroshi Tanaka, Masayuki Yamamoto

BMC Medical Informatics Decis. Mak., 2017

2016

NCMine: Core-peripheral based functional module detection using near-clique mining.

Shu Tadaka, Kengo Kinoshita

Bioinform., 2016

Discrepancies between human DNA, mRNA and protein reference sequences and their relation to single nucleotide variants in the human population.

Matsuyuki Shirota, Kengo Kinoshita

Database J. Biol. Databases Curation, 2016

2015

COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems.

Yasunobu Okamura, Yuichi Aoki, Takeshi Obayashi, Shu Tadaka, Satoshi Ito, Takafumi Narise, Kengo Kinoshita

Nucleic Acids Res., 2015

2014

GIANT: pattern analysis of molecular interactions in 3D structures of protein-small ligand complexes.

Kota Kasahara, Kengo Kinoshita

BMC Bioinform., 2014

2013

COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals.

Takeshi Obayashi, Yasunobu Okamura, Satoshi Ito, Shu Tadaka, Ikuko N. Motoike, Kengo Kinoshita

Nucleic Acids Res., 2013

Comprehensive Classification and Diversity Assessment of Atomic Contacts in Protein-Small Ligand Interactions.

Kota Kasahara, Matsuyuki Shirota, Kengo Kinoshita

J. Chem. Inf. Model., 2013

2011

COXPRESdb: a database to compare gene coexpression in seven model animals.

Takeshi Obayashi, Kengo Kinoshita

Nucleic Acids Res., 2011

SAHG, a comprehensive database of predicted structures of all human proteins.

Chie Motono, Junichi Nakata, Ryotaro Koike, Kana Shimizu, Matsuyuki Shirota, Takayuki Amemiya, Kentaro Tomii, Nozomi Nagano, Naofumi Sakaya, Kiyotaka Misoo, Miwa Sato, Akinori Kidera, Hidekazu Hiroaki, Tsuyoshi Shirai, Kengo Kinoshita, Tamotsu Noguchi, Motonori Ota

Nucleic Acids Res., 2011

2010

Ligand-binding site prediction of proteins based on known fragment-fragment interactions.

Kota Kasahara, Kengo Kinoshita, Toshihisa Takagi

Bioinform., 2010

2009

ATTED-II provides coexpressed gene networks for Arabidopsis.

Takeshi Obayashi, Shinpei Hayashi, Motoshi Saeki, Hiroyuki Ohta, Kengo Kinoshita

Nucleic Acids Res., 2009

PiSite: a database of protein interaction sites using multiple binding states in the PDB.

Miho Higurashi, Takashi Ishida, Kengo Kinoshita

Nucleic Acids Res., 2009

Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis.

Kengo Kinoshita, Takeshi Obayashi

Bioinform., 2009

2008

COXPRESdb: a database of coexpressed gene networks in mammals.

Takeshi Obayashi, Shinpei Hayashi, Masayuki Shibaoka, Motoshi Saeki, Hiroyuki Ohta, Kengo Kinoshita

Nucleic Acids Res., 2008

Prediction of disordered regions in proteins based on the meta approach.

Takashi Ishida, Kengo Kinoshita

Bioinform., 2008

Protein structure databases with new web services for structural biology and biomedical research.

Daron M. Standley, Akira R. Kinjo, Kengo Kinoshita, Haruki Nakamura

Briefings Bioinform., 2008

2007

ATTED-II: a database of co-expressed genes and <i>cis</i> elements for identifying co-regulated gene groups in <i>Arabidopsis</i>.

Takeshi Obayashi, Kengo Kinoshita, Kenta Nakai, Masayuki Shibaoka, Shinpei Hayashi, Motoshi Saeki, Daisuke Shibata, Kazuki Saito, Hiroyuki Ohta

Nucleic Acids Res., 2007

eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape.

Kengo Kinoshita, Yoichi Murakami, Haruki Nakamura

Nucleic Acids Res., 2007

PrDOS: prediction of disordered protein regions from amino acid sequence.

Takashi Ishida, Kengo Kinoshita

Nucleic Acids Res., 2007

2006

PreBI: prediction of biological interfaces of proteins in crystals.

Yuko Tsuchiya, Kengo Kinoshita, Nobutoshi Ito, Haruki Nakamura

Nucleic Acids Res., 2006

DBTGR: a database of tunicate promoters and their regulatory elements.

Nicolas Sierro, Takehiro Kusakabe, Keun-Joon Park, Riu Yamashita, Kengo Kinoshita, Kenta Nakai

Nucleic Acids Res., 2006

2005

PreDs: a server for predicting dsDNA-binding site on protein molecular surfaces.

Yuko Tsuchiya, Kengo Kinoshita, Haruki Nakamura

Bioinform., 2005

P-cats: prediction of catalytic residues in proteins from their tertiary structures.

Kengo Kinoshita, Motonori Ota

Bioinform., 2005

2004

eF-site and PDBjViewer: database and viewer for protein functional sites.

Kengo Kinoshita, Haruki Nakamura

Bioinform., 2004