Ken Kurokawa

According to our database, Ken Kurokawa authored at least 13 papers between 2005 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

PZLAST: an ultra-fast sequence similarity search tool implemented on a MIMD processor.

Hitoshi Ishikawa, Hiroshi Mori, Koichi Higashi, Yoshiaki Kato, Tomofumi Sakai, Toshikazu Ebisuzaki, Ken Kurokawa

Int. J. Netw. Comput., 2022

2021

Comprehensive discovery of CRISPR-targeted terminally redundant sequences in the human gut metagenome: Viruses, plasmids, and more.

Ryota Sugimoto, Luca Nishimura, Phuong Thanh Nguyen, Jumpei Ito, Nicholas F. Parrish, Hiroshi Mori, Ken Kurokawa, Hirofumi Nakaoka, Ituro Inoue

PLoS Comput. Biol., 2021

PZLAST: an ultra-fast amino acid sequence similarity search server against public metagenomes.

Hiroshi Mori, Hitoshi Ishikawa, Koichi Higashi, Yoshiaki Kato, Toshikazu Ebisuzaki, Ken Kurokawa

Bioinform., 2021

2018

Latent environment allocation of microbial community data.

Koichi Higashi, Shinya Suzuki, Shin Kurosawa, Hiroshi Mori, Ken Kurokawa

PLoS Comput. Biol., 2018

VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing.

Hiroshi Mori, Takayuki Maruyama, Masahiro Yano, Takuji Yamada, Ken Kurokawa

BMC Syst. Biol., 2018

2015

DomSign: a top-down annotation pipeline to enlarge enzyme space in the protein universe.

Tianmin Wang, Hiroshi Mori, Chong Zhang, Ken Kurokawa, Xin-Hui Xing, Takuji Yamada

BMC Bioinform., 2015

2014

Addendum: Enterotypes of the human gut microbiome.

Manimozhiyan Arumugam, Jeroen Raes, Eric Pelletier, Denis Le Paslier, Takuji Yamada, Daniel R. Mende, Gabriel R. Fernandes, Julien Tap, Thomas Brüls, Jean-Michel Batto, Marcelo Bertalan, Natalia Borruel, Francesc Casellas, Leyden Fernández, Laurent Gautier, Torben Hansen, Masahira Hattori, Tetsuya Hayashi, Michiel Kleerebezem, Ken Kurokawa, Marion Leclerc, Florence Levenez, Chaysavanh Manichanh, Henrik Bjørn Nielsen, Trine Nielsen, Nicolas Pons, Julie Poulain, Junjie Qin, Thomas Sicheritz-Pontén, Sebastian Tims, David Torrents, Edgardo Ugarte, Erwin G. Zoetendal, Jun Wang, Francisco Guarner, Oluf Pedersen, Willem M. de Vos, Søren Brunak, Joël Dore, MetaHIT consortium, Jean Weissenbach, S. Dusko Ehrlich, Peer Bork

Nat., 2014

CLAST: CUDA implemented large-scale alignment search tool.

Masahiro Yano, Hiroshi Mori, Yutaka Akiyama, Takuji Yamada, Ken Kurokawa

BMC Bioinform., 2014

2010

VITCOMIC: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences.

Hiroshi Mori, Fumito Maruyama, Ken Kurokawa

BMC Bioinform., 2010

2007

Comparison of Protein Complexes Predicted from PPI Networks by DPClus and Newman Clustering Algorithms.

Hisashi Tuji, Md. Altaf-Ul-Amin, Masanori Arita, Hirokazu Nishio, Yoko Shinbo, Ken Kurokawa, Shigehiko Kanaya

Inf. Media Technol., 2007

Elucidating Conservation of Genes in Multiple Genomes Based on Graphs Configured by Bidirectional Best-Hit Relationships.

Hijiri Maeno, Md. Altaf-Ul-Amin, Yoko Shinbo, Ken Kurokawa, Naotake Ogasawara, Shigehiko Kanaya

Inf. Media Technol., 2007

2006

Development and implementation of an algorithm for detection of protein complexes in large interaction networks.

Md. Altaf-Ul-Amin, Yoko Shinbo, Kenji Mihara, Ken Kurokawa, Shigehiko Kanaya

BMC Bioinform., 2006

2005

Prediction of Protein Functions Based on Protein-Protein Interaction Networks: A Min-Cut Approach.

Md. Altaf-Ul-Amin, Toshihiro Koma, Ken Kurokawa, Shigehiko Kanaya

Proceedings of the 21st International Conference on Data Engineering Workshops, 2005