Ken A. Dill

According to our database, Ken A. Dill authored at least 30 papers between 1997 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

MELD-Bracket Ranks Binding Affinities of Diverse Sets of Ligands.

Sridip Parui, James C. Robertson, Sandeep Somani, Gary Tresadern, Cong Liu, Ken A. Dill

J. Chem. Inf. Model., May, 2023

2020

Inferring a network from dynamical signals at its nodes.

Corey Weistuch, Luca Agozzino, Lilianne R. Mujica-Parodi, Ken A. Dill

PLoS Comput. Biol., 2020

Proteostasis is adaptive: Balancing chaperone holdases against foldases.

Adam M. R. de Graff, David E. Mosedale, Tilly Sharp, Ken A. Dill, David J. Grainger

PLoS Comput. Biol., 2020

Sampling and refinement protocols for template-based macrocycle docking: 2018 D3R Grand Challenge 4.

Sergei Kotelnikov, Andrey Alekseenko, Cong Liu, Mikhail Ignatov, Dzmitry Padhorny, Emiliano Brini, Mark Lukin, Evangelos A. Coutsias, Ken A. Dill, Dima Kozakov

J. Comput. Aided Mol. Des., 2020

2019

Monte Carlo on the manifold and MD refinement for binding pose prediction of protein-ligand complexes: 2017 D3R Grand Challenge.

Mikhail Ignatov, Cong Liu, Andrey Alekseenko, Zhuyezi Sun, Dzmitry Padhorny, Sergei Kotelnikov, Andrey M. Kazennov, Ivan Grebenkin, Yaroslav Kholodov, Istvan Kolosvari, Alberto Pérez, Ken A. Dill, Dima Kozakov

J. Comput. Aided Mol. Des., 2019

2017

Citation histories of papers: sometimes the rich get richer, sometimes they don't.

Michael J. Hazoglu, Vivek Kulkarni, Steven Skiena, Ken A. Dill

CoRR, 2017

2016

Adapting the semi-explicit assembly solvation model for estimating water-cyclohexane partitioning with the SAMPL5 molecules.

Emiliano Brini, S. Shanaka Paranahewage, Christopher J. Fennell, Ken A. Dill

J. Comput. Aided Mol. Des., 2016

2015

Reply to C. Tsallis' "Conceptual Inadequacy of the Shore and Johnson Axioms for Wide Classes of Complex Systems".

Steve Pressé, Kingshuk Ghosh, Julian Lee, Ken A. Dill

Entropy, 2015

2014

Testing the semi-explicit assembly model of aqueous solvation in the SAMPL4 challenge.

Libo Li, Ken A. Dill, Christopher J. Fennell

J. Comput. Aided Mol. Des., 2014

2012

Testing the semi-explicit assembly solvation model in the SAMPL3 community blind test.

Charles W. Kehoe, Christopher J. Fennell, Ken A. Dill

J. Comput. Aided Mol. Des., 2012

2011

Power-law distribution functions derived from maximum entropy and a symmetry relationship

G. J. Peterson, Ken A. Dill

CoRR, 2011

2010

Nonuniversal power law scaling in the probability distribution of scientific citations

G. J. Peterson, Steve Pressé, Ken A. Dill

CoRR, 2010

2009

Predicting Peptide Structures in Native Proteins from Physical Simulations of Fragments.

Vincent A. Voelz, M. Scott Shell, Ken A. Dill

PLoS Comput. Biol., 2009

2006

Correction: Folding Very Short Peptides Using Molecular Dynamics.

Bosco K. Ho, Ken A. Dill

PLoS Comput. Biol., 2006

Folding Very Short Peptides Using Molecular Dynamics.

Bosco K. Ho, Ken A. Dill

PLoS Comput. Biol., 2006

Special Section On Multiscale Modeling In Biology.

Tamar Schlick, Ken A. Dill

Multiscale Model. Simul., 2006

Long-Time Protein Folding Dynamics from Short-Time Molecular Dynamics Simulations.

John D. Chodera, William C. Swope, Jed W. Pitera, Ken A. Dill

Multiscale Model. Simul., 2006

A Grammatical Theory for the Conformational Changes of Simple Helix Bundles.

David Chiang, Aravind K. Joshi, Ken A. Dill

J. Comput. Biol., 2006

Protein folding and chart parsing.

Julia Hockenmaier, Aravind K. Joshi, Ken A. Dill

Proceedings of the EMNLP 2006, 2006

2005

Rotational superposition and least squares: The SVD and quaternions approaches yield identical results. Reply to the preceding comment by G. Kneller.

Evangelos A. Coutsias, Chaok Seok, Ken A. Dill

J. Comput. Chem., 2005

2004

A kinematic view of loop closure.

Evangelos A. Coutsias, Chaok Seok, Matthew P. Jacobson, Ken A. Dill

J. Comput. Chem., 2004

Using quaternions to calculate RMSD.

Evangelos A. Coutsias, Chaok Seok, Ken A. Dill

J. Comput. Chem., 2004

2003

MOPED: Method for optimizing physical energy parameters using decoys.

Chaok Seok, J. Ben Rosen, John D. Chodera, Ken A. Dill

J. Comput. Chem., 2003

Using Motion Planning to Map Protein Folding Landscapes and Analyze Folding Kinetics of Known Native Structures.

Nancy M. Amato, Ken A. Dill, Guang Song

J. Comput. Biol., 2003

A Path Planning-Based Study of Protein Folding with a Case Study of Hairpin Formation in Protein G and L.

Guang Song, Shawna L. Thomas, Ken A. Dill, J. Martin Scholtz, Nancy M. Amato

Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

2002

The elastic net algorithm and protein structure prediction.

Keith D. Ball, Burak Erman, Ken A. Dill

J. Comput. Chem., 2002

1999

Comparing search strategies for finding global optima on energy landscapes.

K. W. Foreman, Andrew T. Phillips, J. Ben Rosen, Ken A. Dill

J. Comput. Chem., 1999

1998

The Large Scale Parallelization of a Conformational 3D Protein Structure Prediction Application.

Philip F. LoCascio, Kaizhi Yue, Peter Cummings, Ken A. Dill

Proceedings of the ACM/IEEE Conference on Supercomputing, 1998

1997

Protein Structure and Energy Landscape Dependence on Sequence Using a Continuous Energy Function.

Ken A. Dill, Andrew T. Phillips, J. Ben Rosen

J. Comput. Biol., 1997

Protein structure prediction and potential energy landscape analysis using continuous global minimization.

Ken A. Dill, Andrew T. Phillips, J. Ben Rosen

Proceedings of the First Annual International Conference on Research in Computational Molecular Biology, 1997