Kei-Hoi Cheung

According to our database, Kei-Hoi Cheung authored at least 72 papers between 1988 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Chemical entity normalization for successful translational development of Alzheimer's disease and dementia therapeutics.

Sarah Mullin, Robert A. McDougal, Kei-Hoi Cheung, Halil Kilicoglu, Amanda Beck, Caroline J. Zeiss

J. Biomed. Semant., December, 2024

2023

From Data to Wisdom: Biomedical Knowledge Graphs for Real-World Data Insights.

Katrin Hänsel, Sarah Dudgeon, Kei-Hoi Cheung, Thomas J. S. Durant, Wade L. Schulz

J. Medical Syst., December, 2023

2021

LinkedImm: a linked data graph database for integrating immunological data.

Syed Ahmad Chan Bukhari, Shrikant Pawar, Jeff Mandell, Steven H. Kleinstein, Kei-Hoi Cheung

BMC Bioinform., 2021

2020

A structured model for immune exposures.

Randi Vita, James A. Overton, Patrick Dunn, Kei-Hoi Cheung, Steven H. Kleinstein, Alessandro Sette, Bjoern Peters

Database J. Biol. Databases Curation, 2020

2019

Reporting and connecting cell type names and gating definitions through ontologies.

James A. Overton, Randi Vita, Patrick Dunn, Julie G. Burel, Syed Ahmad Chan Bukhari, Kei-Hoi Cheung, Steven H. Kleinstein, Alexander D. Diehl, Bjoern Peters

BMC Bioinform., 2019

A linked data graph approach to integration of immunological data.

Syed Ahmad Chan Bukhari, Jeff Mandell, Steven H. Kleinstein, Kei-Hoi Cheung

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018

CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata.

Syed Ahmad Chan Bukhari, Marcos Martínez Romero, Martin J. O'Connor, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen, Kei-Hoi Cheung, Steven H. Kleinstein

BMC Bioinform., 2018

CEDAR: Semantic Web Technology to Support Open Science.

Mark A. Musen, Susanna-Assunta Sansone, Kei-Hoi Cheung, Steven H. Kleinstein, Morgan Crafts, Stephan C. Schürer, John Graybeal

Proceedings of the Companion of the The Web Conference 2018 on The Web Conference 2018, 2018

Formalizing the Representation of Immune Exposures for Human Immunology Studies.

Randi Vita, Bjoern Peters, James A. Overton, Kei-Hoi Cheung, Steven H. Kleinstein

Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018

2017

A Clinical Decision Support System for Monitoring Post-Colonoscopy Patient Follow-Up and Scheduling.

Roxanne Wadia, Mark A. Shifman, Forrest W. Levin, Luis N. Marenco, Cynthia Brandt, Kei-Hoi Cheung, Tamar H. Taddei, Michael Krauthammer

Proceedings of the Summit on Clinical Research Informatics, 2017

2016

Extending gene ontology in the context of extracellular RNA and vesicle communication.

Kei-Hoi Cheung, Shivakumar Keerthikumar, Paola Roncaglia, Sai Lakshmi Subramanian, Matthew E. Roth, Monisha Samuel, Sushma Anand, Lahiru Gangoda, Stephen Gould, Roger Alexander, David Galas, Mark B. Gerstein, Andrew F. Hill, Robert R. Kitchen, Jan Lötvall, Tushar Patel

J. Biomed. Semant., 2016

2015

The center for expanded data annotation and retrieval.

Mark A. Musen, Carol A. Bean, Kei-Hoi Cheung, Michel Dumontier, Kim A. Durante, Olivier Gevaert, Alejandra N. González-Beltrán, Purvesh Khatri, Steven H. Kleinstein, Martin J. O'Connor, Yannick Pouliot, Philippe Rocca-Serra, Susanna-Assunta Sansone, Jeffrey A. Wiser

J. Am. Medical Informatics Assoc., 2015

YPED: An Integrated Bioinformatics Suite and Database for Mass Spectrometry-based Proteomics Research.

Christopher M. Colangelo, Mark A. Shifman, Kei-Hoi Cheung, Kathryn L. Stone, Nicholas Carriero, Erol E. Gulcicek, TuKiet T. Lam, Terence Wu, Robert D. Bjornson, Can Bruce, Angus C. Nairn, Jesse Rinehart, Perry L. Miller, Kenneth R. Williams

Genom. Proteom. Bioinform., 2015

2014

SenseLab: Integration of Multidisciplinary Neuroscience Data.

Gordon M. Shepherd, Thomas M. Morse, Luis N. Marenco, Kei-Hoi Cheung, Ted Carnevale, Michele Migliore, Robert A. McDougal, Michael L. Hines, Perry L. Miller

Proceedings of the Encyclopedia of Computational Neuroscience, 2014

A graph theoretic approach to utilizing protein structure to identify non-random somatic mutations.

Gregory A. Ryslik, Yuwei Cheng, Kei-Hoi Cheung, Yorgo Modis, Hongyu Zhao

BMC Bioinform., 2014

A spatial simulation approach to account for protein structure when identifying non-random somatic mutations.

Gregory A. Ryslik, Yuwei Cheng, Kei-Hoi Cheung, Robert D. Bjornson, Daniel Zelterman, Yorgo Modis, Hongyu Zhao

BMC Bioinform., 2014

2013

Utilizing protein structure to identify non-random somatic mutations.

Gregory A. Ryslik, Yuwei Cheng, Kei-Hoi Cheung, Yorgo Modis, Hongyu Zhao

BMC Bioinform., 2013

2012

A semantic web framework to integrate cancer omics data with biological knowledge.

Matthew Holford, Jamie P. McCusker, Kei-Hoi Cheung, Michael Krauthammer

BMC Bioinform., 2012

2011

Enhancing phylogeography by improving geographical information from GenBank.

Matthew Scotch, Indra Neil Sarkar, Changjiang Mei, Robert Leaman, Kei-Hoi Cheung, Pierina Ortiz, Ashutosh Singraur, Graciela Gonzalez

J. Biomed. Informatics, 2011

2010

Using semantic web rules to reason on an ontology of pseudogenes.

Matthew Holford, Ekta Khurana, Kei-Hoi Cheung, Mark Gerstein

Bioinform., 2010

Semantic SenseLab: Implementing the vision of the Semantic Web in neuroscience.

Matthias Samwald, Huajun Chen, Alan Ruttenberg, Ernest Lim, Luis N. Marenco, Perry L. Miller, Gordon M. Shepherd, Kei-Hoi Cheung

Artif. Intell. Medicine, 2010

Analysis of Cancer Omics Data In A Semantic Web Framework.

Matthew Holford, Jamie P. McCusker, Kei-Hoi Cheung, Michael Krauthammer

Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2010

Provenance of Microarray Experiments for a Better Understanding of Experiment Results.

Helena F. Deus, Jun Zhao, Satya S. Sahoo, Matthias Samwald, Eric Prud'hommeaux, Michael Miller, M. Scott Marshall, Kei-Hoi Cheung

Proceedings of the Second International Workshop on the role of Semantic Web in Provenance Management, 2010

2009

Pseudofam: the pseudogene families database.

Hugo Y. K. Lam, Ekta Khurana, Gang Fang, Philip Cayting, Nicholas Carriero, Kei-Hoi Cheung, Mark B. Gerstein

Nucleic Acids Res., 2009

A journey to Semantic Web query federation in the life sciences.

Kei-Hoi Cheung, H. Robert Frost, M. Scott Marshall, Eric Prud'hommeaux, Matthias Samwald, Jun Zhao, Adrian Paschke

BMC Bioinform., 2009

Bringing Web 2.0 to bioinformatics.

Zhang Zhang, Kei-Hoi Cheung, Jeffrey P. Townsend

Briefings Bioinform., 2009

Semantic Web for Health Care and Life Sciences: a review of the state of the art.

Kei-Hoi Cheung, Eric Prud'hommeaux, Yimin Wang, Susie Stephens

Briefings Bioinform., 2009

Approaches to neuroscience data integration.

Kei-Hoi Cheung, Ernest Lim, Matthias Samwald, Huajun Chen, Luis N. Marenco, Matthew Holford, Thomas M. Morse, Pradeep Mutalik, Gordon M. Shepherd, Perry L. Miller

Briefings Bioinform., 2009

Entrez Neuron RDFa: A Pragmatic Semantic Web Application for Data Integration in Neuroscience Research.

Matthias Samwald, Ernest Lim, Peter Masiar, Luis N. Marenco, Huajun Chen, Thomas M. Morse, Pradeep Mutalik, Gordon M. Shepherd, Perry L. Miller, Kei-Hoi Cheung

Proceedings of the Medical Informatics in a United and Healthy Europe - Proceedings of MIE 2009, The XXIInd International Congress of the European Federation for Medical Informatics, Sarajevo, Bosnia and Herzegovina, August 30, 2009

Linking Open Drug Data.

Anja Jentzsch, Jun Zhao, Oktie Hassanzadeh, Kei-Hoi Cheung, Matthias Samwald, Bo Andersson

Proceedings of the 5th International Conference on Semantic Systems, 2009

2008

HCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0.

Kei-Hoi Cheung, Kevin Y. Yip, Jeffrey P. Townsend, Matthew Scotch

J. Biomed. Informatics, 2008

Semantic mashup of biomedical data.

Kei-Hoi Cheung, Vipul Kashyap, Joanne Luciano, Huajun Chen, Yimin Wang, Susie Stephens

J. Biomed. Informatics, 2008

Case Report: Development of Grid-like Applications for Public Health Using Web 2.0 Mashup Techniques.

Matthew Scotch, Kevin Y. Yip, Kei-Hoi Cheung

J. Am. Medical Informatics Assoc., 2008

Report on semantic web for health care and life sciences workshop.

Huajun Chen, Kei-Hoi Cheung, Michel Dumontier, Eric Prud'hommeaux, Alan Ruttenberg, Susie Stephens, Yimin Wang

Proceedings of the 17th International Conference on World Wide Web, 2008

2007

An interdepartmental Ph.D. program in computational biology and bioinformatics: The Yale perspective.

Mark Gerstein, Dov Greenbaum, Kei-Hoi Cheung, Perry L. Miller

J. Biomed. Informatics, 2007

LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics.

Andrew K. Smith, Kei-Hoi Cheung, Kevin Y. Yip, Martin H. Schultz, Mark Gerstein

BMC Bioinform., 2007

Advancing translational research with the Semantic Web.

Alan Ruttenberg, Tim Clark, William J. Bug, Matthias Samwald, Olivier Bodenreider, Helen Chen, Donald Doherty, Kerstin Forsberg, Yong Gao, Vipul Kashyap, June Kinoshita, Joanne Luciano, M. Scott Marshall, Chimezie Ogbuji, Jonathan Rees, Susie Stephens, Gwendolyn T. Wong, Elizabeth Wu, Davide Zaccagnini, Tonya Hongsermeier, Eric Neumann, Ivan Herman, Kei-Hoi Cheung

BMC Bioinform., 2007

AlzPharm: integration of neurodegeneration data using RDF.

Hugo Y. K. Lam, Luis N. Marenco, Tim Clark, Yong Gao, June Kinoshita, Gordon M. Shepherd, Perry L. Miller, Elizabeth Wu, Gwendolyn T. Wong, Nian Liu, Chiquito J. Crasto, Thomas M. Morse, Susie Stephens, Kei-Hoi Cheung

BMC Bioinform., 2007

Leveraging the structure of the Semantic Web to enhance information retrieval for proteomics.

Andrew K. Smith, Kei-Hoi Cheung, Michael Krauthammer, Martin H. Schultz, Mark Gerstein

Bioinform., 2007

SenseLab: new developments in disseminating neuroscience information.

Chiquito J. Crasto, Luis N. Marenco, Nian Liu, Thomas M. Morse, Kei-Hoi Cheung, Peter C. Lai, Gautam Bahl, Peter Masiar, Hugo Y. K. Lam, Ernest Lim, Huajun Chen, Prakash M. Nadkarni, Michele Migliore, Perry L. Miller, Gordon M. Shepherd

Briefings Bioinform., 2007

Ontology-Based Data Integration For Biomedical Research.

Vipul Kashyap, Kei-Hoi Cheung, Donald Doherty, Matthias Samwald, M. Scott Marshall, Joanne Luciano, Susie Stephens, Ivan Herman, Raymond Hookway

Proceedings of the Semantic Web: Real-World Applications from Industry, 2007

2006

A semantic web approach to biological pathway data reasoning and integration.

Kei-Hoi Cheung, Peishen Qi, David Tuck, Michael Krauthammer

J. Web Semant., 2006

SemBiosphere: A Semantic Web Approach to Recommending Microarray Clustering Services.

Kevin Y. Yip, Peishen Qi, Martin H. Schultz, David W. Cheung, Kei-Hoi Cheung

Proceedings of the Biocomputing 2006, 2006

Using Web Ontology Language to Integrate Heterogeneous Databases in the Neurosciences.

Hugo Y. K. Lam, Luis N. Marenco, Gordon M. Shepherd, Perry L. Miller, Kei-Hoi Cheung

Proceedings of the AMIA 2006, 2006

2005

Case Report: A High Productivity/Low Maintenance Approach to High-performance Computation for Biomedicine: Four Case Studies.

Nicholas Carriero, Michael V. Osier, Kei-Hoi Cheung, Perry L. Miller, Mark Gerstein, Hongyu Zhao, Baolin Wu, Scott Rifkin, Joseph T. Chang, Heping Zhang, Kevin P. White, Kenneth R. Williams, Martin H. Schultz

J. Am. Medical Informatics Assoc., 2005

YeastHub: a semantic web use case for integrating data in the life sciences domain.

Kei-Hoi Cheung, Kevin Y. Yip, Andrew K. Smith, Remko de Knikker, Andy Masiar, Mark Gerstein

Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

YPED: A Proteomics Database for Protein Expression Analysis.

Mark A. Shifman, Kexin Sun, Christopher M. Colangelo, Kei-Hoi Cheung, Perry L. Miller, Kenneth R. Williams

Proceedings of the AMIA 2005, 2005

2004

KARMA: a web server application for comparing and annotating heterogeneous microarray platforms.

Kei-Hoi Cheung, Janet Hager, Deyun Pan, Ranjana Srivastava, Shrikant M. Mane, Yuli Li, Perry L. Miller, Kenneth R. Williams

Nucleic Acids Res., 2004

Identifying projected clusters from gene expression profiles.

Kevin Y. Yip, David W. Cheung, Michael K. Ng, Kei-Hoi Cheung

J. Biomed. Informatics, 2004

Handling multiple testing while interpreting microarrays with the Gene Ontology Database.

Michael V. Osier, Hongyu Zhao, Kei-Hoi Cheung

BMC Bioinform., 2004

A web services choreography scenario for interoperating bioinformatics applications.

Remko de Knikker, Youjun Guo, Jin-Long Li, Albert K. H. Kwan, Kevin Y. Yip, David W. Cheung, Kei-Hoi Cheung

BMC Bioinform., 2004

A XML-Based Approach to Integrating Heterogeneous Yeast Genome Data.

Kei-Hoi Cheung, Deyun Pan, Andrew K. Smith, Michael R. Seringhaus, Shawn M. Douglas, Mark Gerstein

Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Scienes, 2004

2003

ALFRED: the ALelle FREquency Database. Update.

Haseena Rajeevan, Michael V. Osier, Kei-Hoi Cheung, H. Deng, L. Druskin, R. Heinzen, Judith R. Kidd, S. Stein, Andrew J. Pakstis, Nick P. Tosches, C.-C. Yeh, Perry L. Miller, Kenneth K. Kidd

Nucleic Acids Res., 2003

PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for <i>Arabidopsis</i>.

Deyun Pan, Ning Sun, Kei-Hoi Cheung, Zhong Guan, Ligeng Ma, Matthew Holford, Xingwang Deng, Hongyu Zhao

BMC Bioinform., 2003

2002

The TRIPLES database: a community resource for yeast molecular biology.

Anuj Kumar, Kei-Hoi Cheung, Nick P. Tosches, Peter Masiar, Yang Liu, Perry L. Miller, Michael Snyder

Nucleic Acids Res., 2002

A dynamic approach to mapping coordinates between microplates and microarrays.

Kei-Hoi Cheung, Janet Hager, Kenneth Nelson, Kevin P. White, Yuli Li, Michael Snyder, Kenneth R. Williams, Perry L. Miller

J. Biomed. Informatics, 2002

YMD: a microarray database for large-scale gene expression analysis.

Kei-Hoi Cheung, Kevin P. White, Janet Hager, Mark Gerstein, Valerie Reinke, Kenneth Nelson, Peter Masiar, Ranjana Srivastava, Yuli Li, Ju Li, Hongyu Zhao, Jinming Li, David B. Allison, Michael Snyder, Perry L. Miller, Kenneth R. Williams

Proceedings of the AMIA 2002, 2002

2001

ALFRED: an allele frequency database for diverse populations and DNA polymorphisms - an update.

Michael V. Osier, Kei-Hoi Cheung, Judith R. Kidd, Andrew J. Pakstis, Perry L. Miller, Kenneth K. Kidd

Nucleic Acids Res., 2001

An XML Application For Genomic Data Interoperation.

Kei-Hoi Cheung, Yang Liu, Anuj Kumar, Michael Snyder, Mark Gerstein, Perry L. Miller

Proceedings of the 2nd IEEE International Symposium on Bioinformatics and Bioengineering, 2001

A metadata framework for interoperating heterogeneous genome data using XML.

Kei-Hoi Cheung, Aniruddha M. Deshpande, Nick P. Tosches, S. Nath, A. Agrawal, Perry L. Miller, Anuj Kumar, Michael Snyder

Proceedings of the AMIA 2001, 2001

2000

TRIPLES: a database of gene function in Saccharomyces cerevisiae.

Anuj Kumar, Kei-Hoi Cheung, Petra Ross-MacDonald, Paulo S. R. Coelho, Perry L. Miller, Michael Snyder

Nucleic Acids Res., 2000

ALFRED: an allele frequency database for diverse populations and DNA polymorphisms.

Kei-Hoi Cheung, Michael V. Osier, Judith R. Kidd, Andrew J. Pakstis, Perry L. Miller, Kenneth K. Kidd

Nucleic Acids Res., 2000

A Graph-based Meta-data Framework for Interoperation between Genome Databases.

Kei-Hoi Cheung, Dong-Guk Shin

Proceedings of the 1st IEEE International Symposium on Bioinformatics and Biomedical Engineering, 2000

Graphically-enabled integration of bioinformatics tools allowing parallel execution.

Kei-Hoi Cheung, Perry L. Miller, A. H. Sherman, Stephen B. Weston, Eric Stratmann, Martin H. Schultz, Michael Snyder, Anuj Kumar

Proceedings of the AMIA 2000, 2000

1998

A metadata approach to query interoperation between molecular biology databases.

Kei-Hoi Cheung, Prakash M. Nadkarni, Dong-Guk Shin

Bioinform., 1998

A Framework Designed to Represent Both Data and Meta-Data to Enhance Database Interoperability.

Kei-Hoi Cheung, Dong-Guk Shin

Proceedings of the Third International Conference on Integrated Design and Process Technology, IDPT, 1998

A simple model capable of expressing meta-data for database interoperability.

Kei-Hoi Cheung, Dong-Guk Shin

Proceedings of the Computers and Their Applications (CATA-98), 1998

Automatic query mapping among genomic databases: a pilot exploration.

Kei-Hoi Cheung, Prakash M. Nadkarni, Perry L. Miller, Dong-Guk Shin

Proceedings of the AMIA 1998, 1998

1996

DNA Workbench: A Database Package to Manage Regional Physical Mapping.

Prakash M. Nadkarni, Kei-Hoi Cheung, C. Castiglione, Perry L. Miller, Kenneth K. Kidd

J. Comput. Biol., 1996

1995

Application of Technology: Internet-based Support for Bioscience Research: A Collaborative Genome center for Human Chromosome 12.

Perry L. Miller, Prakash M. Nadkarni, Kenneth K. Kidd, Kei-Hoi Cheung, David C. Ward, Amy Banks, Patricia Bray-Ward, Lisa Cupelli, Valerie Herdman, Ivonne Marondel, Kate Montcomery, Beatrice Renault, Sunc-Joo Yoon, Kenneth S. Krauter, Raju Kucherlapati

J. Am. Medical Informatics Assoc., 1995

1992

Fuzzy classification of heart rate trends and artifacts.

Dean F. Sittig, Kei-Hoi Cheung, Lewis Berman

Proceedings of the Fifth Annual IEEE Symposium on Computer-Based Medical Systems (CBMS'92), 1992

1988

Isoreflectance contours for medical imaging.

Kei-Hoi Cheung, Martin D. Fox

IEEE Trans. Biomed. Eng., 1988