Kay C. Wiese

Orcid: 0000-0003-4507-1892

Affiliations:
  • Simon Fraser University, Burnaby, Canada


According to our database1, Kay C. Wiese authored at least 65 papers between 1998 and 2024.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
AGED-ViT: A Novel Transformer-Based Framework for Diagnosis of Alzheimer's Disease by Leveraging Gene Expression Data.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2024

2023
A Comparison of Machine Learning Models for Predicting CRISPR/Cas On-target Efficacy.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2023

Navitas/Optimus: A Novel Computational Tool for enhanced CRISPR/Cas Genome Editing.
Proceedings of the 36th Canadian Conference on Artificial Intelligence, 2023

2022
SigTools: exploratory visualization for genomic signals.
Bioinform., 2022

Continuous chromatin state feature annotation of the human epigenome.
Bioinform., 2022

EvoDNN - Evolving Weights, Biases, and Activation Functions in a Deep Neural Network.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2022

2019
EvoDNN - An Evolutionary Deep Neural Network with Heterogeneous Activation Functions.
Proceedings of the IEEE Congress on Evolutionary Computation, 2019

2018
EvoNN: a customizable evolutionary neural network with heterogenous activation functions.
Proceedings of the Genetic and Evolutionary Computation Conference Companion, 2018

2017
RNA Visualization: Relevance and the Current State-of-the-Art Focusing on Pseudoknots.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017

Numerical integration methods and layout improvements in the context of dynamic RNA visualization.
BMC Bioinform., 2017

2015
A study of different annealing schedules in SARNA-predict: A permutation based SA algorithm for RNA folding.
Int. J. Intell. Comput. Cybern., 2015

Diploidy in evolutionary algorithms for dynamic optimization problems: A best-chromosome-wins dominance mechanism.
Int. J. Intell. Comput. Cybern., 2015

A permutation based simulated annealing algorithm to predict pseudoknotted RNA secondary structures.
Int. J. Bioinform. Res. Appl., 2015

2013
pEvoSAT: a novel permutation based genetic algorithm for solving the boolean satisfiability problem.
Proceedings of the Genetic and Evolutionary Computation Conference, 2013

2012
Improving the Portability and Performance of jViz.RNA - A Dynamic RNA Visualization Software.
Proceedings of the Pattern Recognition in Bioinformatics, 2012

Non-coding RNA gene finding with combined partial covariance models.
Proceedings of the 2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2012

2011
Combined covariance model for non-coding RNA gene finding.
Proceedings of the 2011 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2011

Secondary structure element voting for RNA gene finding.
Proceedings of the 2011 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2011

Improving splice-junctions classification employing a novel encoding schema and decision-tree.
Proceedings of the IEEE Congress on Evolutionary Computation, 2011

2010
SARNA-Predict: Accuracy Improvement of RNA Secondary Structure Prediction Using Permutation-Based Simulated Annealing.
IEEE ACM Trans. Comput. Biol. Bioinform., 2010

Expanded study of efn2 thermodynamic model performance on RnaPredict, an evolutionary algorithm for RNA folding.
Proceedings of the 2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2010

An exploration of individual RNA structural elements in RNA gene finding.
Proceedings of the 2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2010

A study of RNA secondary structure prediction using different mutation operators.
Proceedings of the IEEE Congress on Evolutionary Computation, 2010

2009
SARNA-ensemble-predict: The effect of different dissimilarity metrics on a novel ensemble-based RNA secondary structure prediction algorithm.
Proceedings of the 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2009

Performance prediction for RNA design using parametric and non-parametric regression models.
Proceedings of the 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2009

rnaDesign: Local search for RNA secondary structure design.
Proceedings of the 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2009

Impact of an enhanced thermodynamic model on RnaPredict, an evolutionary algorithm for RNA secondary structure prediction.
Proceedings of the IEEE Congress on Evolutionary Computation, 2009

RNA pseudoknot prediction via an evolutionary algorithm.
Proceedings of the IEEE Congress on Evolutionary Computation, 2009

2008
Considering Stem-Loops as Sequence Signals for Finding Ribosomal RNA Genes.
Proceedings of the Computational Intelligence in Biomedicine and Bioinformatics, 2008

Integrating Thermodynamic and Observed-Frequency Data for Non-coding RNA Gene Search.
Trans. Comp. Sys. Biology, 2008

RnaPredict-An Evolutionary Algorithm for RNA Secondary Structure Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform., 2008

A hybrid clustering/evolutionary algorithm for RNA folding.
Proceedings of the 2008 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2008

SARNA-Predict-pk: Predicting RNA secondary structures including pseudoknots.
Proceedings of the 2008 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2008

2007
Society Briefs - Bioinformatics and Bioengineering Technical Committee.
IEEE Comput. Intell. Mag., 2007

SARNA-Predict: A Study of RNA Secondary Structure Prediction Using Different Annealing Schedules.
Proceedings of the 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2007

The significance of thermodynamic models in the accuracy improvement of RNA secondary structure prediction using permutation-based simulated annealing.
Proceedings of the IEEE Congress on Evolutionary Computation, 2007

Improved Covariance Model Parameter Estimation Using RNA Thermodynamic Properties.
Proceedings of the 2nd International ICST Conference on Bio-Inspired Models of Network, 2007

2006
IEEE/CIS Tour de China [Family Corner].
IEEE Comput. Intell. Mag., 2006

<i>Ebbie</i>: automated analysis and storage of small RNA cloning data using a dynamic web server.
BMC Bioinform., 2006

Comparison of <i>P-RnaPredict</i> and <i>mfold</i> - algorithms for RNA secondary structure prediction.
Bioinform., 2006

Analysis of Thermodynamic Models and Performance in RnaPredict - An Evolutionary Algorithm for RNA Folding.
Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006

SARNA-Predict: A Simulated Annealing Algorithm for RNA Secondary Structure Prediction.
Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006

A Detailed Analysis of Parallel Speedup in P-RnaPredict - An Evolutionary Algorithm for RNA Secondary Structure Prediction.
Proceedings of the IEEE International Conference on Evolutionary Computation, 2006

jViz.Rna - An Interactive Graphical Tool for Visualizing RNA Secondary Structure Including Pseudoknots.
Proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006), 2006

Graph Drawing Tools for Bioinformatics Research: An Overview.
Proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006), 2006

2005
The impact of pseudorandom number quality on <i>P-RnaPredict</i>, a parallel genetic algorithm for RNA secondary structure prediction.
Proceedings of the Genetic and Evolutionary Computation Conference, 2005

Algorithms for RNA folding: a comparison of dynamic programming and parallel evolutionary algorithms.
Proceedings of the IEEE Congress on Evolutionary Computation, 2005

Significance of randomness in P-RnaPredict - a parallel evolutionary algorithm for RNA folding.
Proceedings of the IEEE Congress on Evolutionary Computation, 2005

2004
Exploring the Use of Stem-Loop Characteristics for Pinpointing Structural RNA Genes.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

A parallel evolutionary algorithm for RNA secondary structure prediction using stacking-energies (INN and INN-HB).
Proceedings of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2004

Comparison of dynamic programming and evolutionary algorithms for RNA secondary structure prediction.
Proceedings of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2004

Using stacking-energies (INN and INN-HB) for improving the accuracy of RNA secondary structure prediction with an evolutionary algorithm - a comparison to known structures.
Proceedings of the IEEE Congress on Evolutionary Computation, 2004

Genetic Algorithm Based OSPF Network Routing Using LEDA.
Proceedings of the Advances in Artificial Intelligence, 2004

Comparison of Parallel and Serial Genetic Algorithms for RNA Secondary Structure Prediction.
Proceedings of the Advances in Artificial Intelligence, 2004

Comparison of Permutation-Based and Binary Representation in a Genetic Algorithm for RNA Secondary Structure Prediction.
Proceedings of the Advances in Artificial Intelligence, 2004

2003
RNA Structure as Permutation: A GA Approach Comparing Different Genetic Sequencing Operators.
Proceedings of the Foundations of Intelligent Systems, 14th International Symposium, 2003

Permutation-based RNA secondary structure prediction via a genetic algorithm.
Proceedings of the IEEE Congress on Evolutionary Computation, 2003

A distributed genetic algorithm for RNA secondary structure prediction.
Proceedings of the IEEE Congress on Evolutionary Computation, 2003

2002
A Permutation Based Genetic Algorithm for RNA Secondary Structure Prediction.
Proceedings of the Soft Computing Systems - Design, Management and Applications, 2002

2001
Keep-Best Reproduction: A Local Family Competition Selection Strategy and the Environment it Flourishes in.
Constraints An Int. J., 2001

2000
ASERC - A Genetic Sequencing Operator for Asymmetric Permutation Problems.
Proceedings of the Advances in Artificial Intelligence, 2000

1999
Convergence Characteristics of Keep-Best Reproduction.
Proceedings of the 1999 ACM Symposium on Applied Computing, 1999

1998
Keep-best reproduction: a selection strategy for genetic algorithms.
Proceedings of the 1998 ACM symposium on Applied Computing, 1998

Parallel Genetic Algorithms for Constrained Ordering Problems.
Proceedings of the Eleventh International Florida Artificial Intelligence Research Society Conference, 1998

The Effect of Genetic Operator Probabilities and Selection Strategies on the Performance of a Genetic Algorithm.
Proceedings of the Advances in Artificial Intelligence, 1998


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