Katsuhisa Horimoto

According to our database1, Katsuhisa Horimoto authored at least 44 papers between 1994 and 2022.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Links

On csauthors.net:

Bibliography

2022
Phosprof: pathway analysis database of drug response based on phosphorylation activity measurements.
Database J. Biol. Databases Curation, 2022

2019
ToGo-WF: prediction of RNA tertiary structures and RNA-RNA/protein interactions using the KNIME workflow.
J. Comput. Aided Mol. Des., 2019

2013
Identification of master regulator candidates in conjunction with network screening and inference.
Int. J. Data Min. Bioinform., 2013

Identification of upstream regulators for prognostic expression signature genes in colorectal cancer.
BMC Syst. Biol., 2013

2012
A computational procedure for identifying master regulator candidates: a case study on diabetes progression in Goto-Kakizaki rats.
BMC Syst. Biol., 2012

Network clustering along diabetes progression in three tissues of Goto-Kakizaki rats.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

A Gaussian graphical model for identifying significantly responsive regulatory networks from time series gene expression data.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

Exploration of Cellular Relationships from Characteristically Expressed Genes by Partial Canonical Correlation Analysis.
Proceedings of the Sixth International Conference on Complex, 2012

2011
International Symposium on Symbolic Systems Biology (NII Shonan Meeting 2011-7).
NII Shonan Meet. Rep., 2011

Discovery of Chemical Compound Groups with Common Structures by a Network Analysis Approach (Affinity Prediction Method).
J. Chem. Inf. Model., 2011

Network screening of Goto-Kakizaki rat liver microarray data during diabetic progression.
BMC Syst. Biol., 2011

Possible linkages between the inner and outer cellular states of human induced pluripotent stem cells.
BMC Syst. Biol., 2011

2010
Parameter optimization by using differential elimination: a general approach for introducing constraints into objective functions.
BMC Syst. Biol., 2010

Improvement of estimation accuracy in parameter optimization by symbolic computation.
Proceedings of the 2010 IEEE International Symposium on Computer-Aided Control System Design, 2010

A procedure for identifying master regulators in conjunction with network screening and inference.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

A General Procedure for Accurate Parameter Estimation in Dynamic Systems Using New Estimation Errors.
Proceedings of the Algebraic and Numeric Biology - 4th International Conference, 2010

2009
Foreword.
Math. Comput. Sci., 2009

Co-Expressed Gene Assessment Based on the Path Consistency Algorithm: Operon Detention in Escherichia coli.
Proceedings of the IEEE International Conference on Systems, 2009

Detection of network structure changes by graphical chain modeling: a case study of hepatitis C virus-related hepatocellular carcinoma.
Proceedings of the 48th IEEE Conference on Decision and Control, 2009

Completing Networks Using Observed Data.
Proceedings of the Algorithmic Learning Theory, 20th International Conference, 2009

2008
Inference of Probabilities over a Stochastic IL-System by Quantifier Elimination.
Math. Comput. Sci., 2008

Judgment Algorithm for Periodicity of Time Series Data Based on Bayesian Information Criterion.
J. Bioinform. Comput. Biol., 2008

High-throughput Automated Image Processing System for Cell Array Observations.
Inf. Media Technol., 2008

Integer programming-based approach to allocation of reporter genes for cell array analysis.
Int. J. Bioinform. Res. Appl., 2008

Network evaluation from the consistency of the graph structure with the measured data.
BMC Syst. Biol., 2008

2007
Gene Systems Network Inferred from Expression Profiles in Hepatocellular Carcinogenesis by Graphical Gaussian Model.
EURASIP J. Bioinform. Syst. Biol., 2007

Derivation of rigorous conditions for high cell-type diversity by algebraic approach.
Biosyst., 2007

An Algebraic-Numeric Algorithm for the Model Selection in Kinetic Networks.
Proceedings of the Computer Algebra in Scientific Computing, 10th International Workshop, 2007

Exact Parameter Determination for Parkinson's Disease Diagnosis with PET Using an Algebraic Approach.
Proceedings of the Algebraic Biology, Second International Conference, 2007

Inference of Protein-Protein Interactions by Using Co-evolutionary Information.
Proceedings of the Algebraic Biology, Second International Conference, 2007

2006
Protein Threading with Profiles and Distance Constraints Using Clique Based Algorithms.
J. Bioinform. Comput. Biol., 2006

Symbolic-numeric Estimation of Parameters in Biochemical Models by Quantifier Elimination.
J. Bioinform. Comput. Biol., 2006

Dynamic Programming and Clique Based Approaches for Protein Threading with Profiles and Constraints.
IEICE Trans. Fundam. Electron. Commun. Comput. Sci., 2006

Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions.
Bioinform., 2006

2005
ASIAN: a web server for inferring a regulatory network framework from gene expression profiles.
Nucleic Acids Res., 2005

Clique-based algorithms for protein threading with profiles and constraints.
Proceedings of 3rd Asia-Pacific Bioinformatics Conference, 17-21 January 2005, Singapore, 2005

2004
ASIAN: a website for network inference.
Bioinform., 2004

Protein Threading with Profiles and Constraints.
Proceedings of the 4th IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2004), 2004

2003
Deduction of a gene regulatory relationship framework from gene expression data by the application of graphical Gaussian modeling.
Signal Process., 2003

2002
Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling.
Bioinform., 2002

2001
Statistical estimation of cluster boundaries in gene expression profile data.
Bioinform., 2001

Comprehensive comparison between locations of orthologous genes on archaeal and bacterial genomes.
Bioinform., 2001

1998
A method for comparing circular genomes from gene locations: application to mitochondrial genomes.
Bioinform., 1998

1994
Protein Superfamily Database (Prosup).
Proceedings of the Information Revolution: Impact on Science and Technology. Papers from CODATA Conf. 1994, 1994


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