Katrina M. Waters

According to our database, Katrina M. Waters authored at least 16 papers between 2006 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

3′ RNA-seq is superior to standard RNA-seq in cases of sparse data but inferior at identifying toxicity pathways in a model organism.

Ryan S. McClure, Yvonne Rericha, Katrina M. Waters, Robyn L. Tanguay

Frontiers Bioinform., May, 2023

Missing data in multi-omics integration: Recent advances through artificial intelligence.

Javier E. Flores, Daniel Claborne, Zachary D. Weller, Bobbie-Jo M. Webb-Robertson, Katrina M. Waters, Lisa M. Bramer

Frontiers Artif. Intell., February, 2023

2021

Hypergraph models of biological networks to identify genes critical to pathogenic viral response.

Song Feng, Emily Heath, Brett A. Jefferson, Cliff A. Joslyn, Henry Kvinge, Hugh D. Mitchell, Brenda Praggastis, Amie J. Eisfeld, Amy C. Sims, Larissa B. Thackray, Shufang Fan, Kevin B. Walters, Peter J. Halfmann, Danielle Westhoff-Smith, Qing Tan, Vineet D. Menachery, Timothy P. Sheahan, Adam S. Cockrell, Jacob F. Kocher, Kelly G. Stratton, Natalie C. Heller, Lisa M. Bramer, Michael S. Diamond, Ralph S. Baric, Katrina M. Waters, Yoshihiro Kawaoka, Jason E. McDermott, Emilie Purvine

BMC Bioinform., 2021

2019

Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration.

Joseph Brown, Aaron R. Phillips, David A. Lewis, Michael-Andres Mans, Yvonne Chang, Robert L. Tanguay, Elena S. Peterson, Katrina M. Waters, Susan C. Tilton

BMC Bioinform., December, 2019

Unified feature association networks through integration of transcriptomic and proteomic data.

Ryan S. McClure, Jason P. Wendler, Joshua N. Adkins, Jesica Swanstrom, Ralph S. Baric, Brooke L. Deatherage Kaiser, Kristie L. Oxford, Katrina M. Waters, Jason E. McDermott

PLoS Comput. Biol., 2019

2016

The effect of inhibition of PP1 and TNFα signaling on pathogenesis of SARS coronavirus.

Jason E. McDermott, Hugh D. Mitchell, Lisa E. Gralinski, Amie J. Eisfeld, Laurence Josset, Armand Bankhead III, Gabriele Neumann, Susan C. Tilton, Alexandra Schäfer, Chengjun Li, Shufang Fan, Shannon K. McWeeney, Ralph S. Baric, Michael G. Katze, Katrina M. Waters

BMC Syst. Biol., 2016

2013

Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice.

Nicolas Tchitchek, Amie J. Eisfeld, Jennifer Tisoncik-Go, Laurence Josset, Lisa E. Gralinski, Christophe Bécavin, Susan C. Tilton, Bobbie-Jo M. Webb-Robertson, Martin T. Ferris, Allison L. Totura, Chengjun Li, Gabriele Neumann, Thomas O. Metz, Richard D. Smith, Katrina M. Waters, Ralph S. Baric, Yoshihiro Kawaoka, Michael G. Katze

BMC Syst. Biol., 2013

2012

Topological analysis of protein co-abundance networks identifies novel host targets important for HCV infection and pathogenesis.

Jason E. McDermott, Deborah L. Diamond, Courtney D. Corley, Angela L. Rasmussen, Michael G. Katze, Katrina M. Waters

BMC Syst. Biol., 2012

Bioinformatics resource manager v2.3: an integrated software environment for systems biology with microRNA and cross-species analysis tools.

Susan C. Tilton, Tamara L. Tal, Sheena M. Scroggins, Jill A. Franzosa, Elena S. Peterson, Robert L. Tanguay, Katrina M. Waters

BMC Bioinform., 2012

2011

Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems.

Jason E. McDermott, Harish Shankaran, Amie J. Eisfeld, Sarah E. Belisle, Gabriele Neumann, Chengjun Li, Shannon K. McWeeney, Carol Sabourin, Yoshihiro Kawaoka, Michael G. Katze, Katrina M. Waters

BMC Syst. Biol., 2011

Improved quality control processing of peptide-centric LC-MS proteomics data.

Melissa M. Matzke, Katrina M. Waters, Thomas O. Metz, Jon M. Jacobs, Amy C. Sims, Ralph S. Baric, Joel G. Pounds, Bobbie-Jo M. Webb-Robertson

Bioinform., 2011

2010

A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics.

Bobbie-Jo M. Webb-Robertson, William R. Cannon, Christopher S. Oehmen, Anuj R. Shah, Vidhya Gurumoorthi, Mary S. Lipton, Katrina M. Waters

Bioinform., 2010

2008

Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models.

Simon Rogers, Mark A. Girolami, Walter Kolch, Katrina M. Waters, Tao Liu, Brian Thrall, H. Steven Wiley

Bioinform., 2008

An Extensible, Scalable Architecture for Managing Bioinformatics Data and Analyses.

Anuj R. Shah, Mudita Singhal, Tara D. Gibson, Chandrika Sivaramakrishnan, Katrina M. Waters, Ian Gorton

Proceedings of the Fourth International Conference on e-Science, 2008

2007

Enabling high-throughput data management for systems biology: The Bioinformatics Resource Manager.

Anuj R. Shah, Mudita Singhal, Kyle R. Klicker, Eric G. Stephan, H. Steven Wiley, Katrina M. Waters

Bioinform., 2007

2006

Analytics challenge - High-throughput visual analytics biological sciences: turning data into knowledge.

Christopher S. Oehmen, Lee Ann McCue, Joshua N. Adkins, Katrina M. Waters, Tim Carlson, William R. Cannon, Bobbie-Jo M. Webb-Robertson, Douglas J. Baxter, Elena S. Peterson, Mudita Singhal, Anuj R. Shah, Kyle R. Klicker

Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006