Katherine P. Liao

According to our database, Katherine P. Liao authored at least 29 papers between 2012 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

LATTE: Label-efficient incident phenotyping from longitudinal electronic health records.

Jun Wen, Jue Hou, Clara-Lea Bonzel, Yihan Zhao, Victor M. Castro, Vivian S. Gainer, Dana Weisenfeld, Tianrun Cai, Yuk-Lam Ho, Vidul Ayakulangara Panickan, Lauren Costa, Chuan Hong, J. Michael Gaziano, Katherine P. Liao, Junwei Lu, Kelly Cho, Tianxi Cai

Patterns, January, 2024

Centralized Interactive Phenomics Resource: an integrated online phenomics knowledgebase for health data users.

Jacqueline Honerlaw, Yuk-Lam Ho, Francesca Fontin, Michael Murray, Ashley Galloway, David Heise, Keith Connatser, Laura Davies, Jeffrey Gosian, Monika Maripuri, John Russo, Rahul Sangar, Vidisha Tanukonda, Edward Zielinski, Maureen Dubreuil, Andrew J. Zimolzak, Vidul Ayakulangara Panickan, Su-Chun Cheng, Stacey B. Whitbourne, David R. Gagnon, Tianxi Cai, Katherine P. Liao, Rachel B. Ramoni, J. Michael Gaziano, Sumitra Muralidhar, Kelly Cho

J. Am. Medical Informatics Assoc., 2024

Unified Representation of Genomic and Biomedical Concepts through Multi-Task, Multi-Source Contrastive Learning.

Hongyi Yuan, Suqi Liu, Kelly Cho, Katherine P. Liao, Alexandre Pereira, Tianxi Cai

CoRR, 2024

Federated One-Shot Ensemble Clustering.

Rui Duan, Xin Xiong, Jueyi Liu, Katherine P. Liao, Tianxi Cai

CoRR, 2024

2023

Semi-supervised calibration of noisy event risk (SCANER) with electronic health records.

Chuan Hong, Liang Liang, Qianyu Yuan, Kelly Cho, Katherine P. Liao, Michael J. Pencina, David C. Christiani, Tianxi Cai

J. Biomed. Informatics, August, 2023

Framework of the Centralized Interactive Phenomics Resource (CIPHER) standard for electronic health data-based phenomics knowledgebase.

Jacqueline Honerlaw, Yuk-Lam Ho, Francesca Fontin, Jeffrey Gosian, Monika Maripuri, Michael Murray, Rahul Sangar, Ashley Galloway, Andrew J. Zimolzak, Stacey B. Whitbourne, Juan P. Casas, Rachel B. Ramoni, David R. Gagnon, Tianxi Cai, Katherine P. Liao, J. Michael Gaziano, Sumitra Muralidhar, Kelly Cho

J. Am. Medical Informatics Assoc., April, 2023

Multimodal representation learning for predicting molecule-disease relations.

Jun Wen, Xiang Zhang, Everett Neil Rush, Vidul Ayakulangara Panickan, Xingyu Li, Tianrun Cai, Doudou Zhou, Yuk-Lam Ho, Lauren Costa, Edmon Begoli, Chuan Hong, J. Michael Gaziano, Kelly Cho, Junwei Lu, Katherine P. Liao, Marinka Zitnik, Tianxi Cai

Bioinform., February, 2023

Augmented Transfer Regression Learning with Semi-non-parametric Nuisance Models.

Molei Liu, Yi Zhang, Katherine P. Liao, Tianxi Cai

J. Mach. Learn. Res., 2023

2022

Multiview Incomplete Knowledge Graph Integration with application to cross-institutional EHR data harmonization.

Doudou Zhou, Ziming Gan, Xu Shi, Alina Patwari, Everett Neil Rush, Clara-Lea Bonzel, Vidul Ayakulangara Panickan, Chuan Hong, Yuk-Lam Ho, Tianrun Cai, Lauren Costa, Xiaoou Li, Victor M. Castro, Shawn N. Murphy, Gabriel A. Brat, Griffin M. Weber, Paul Avillach, J. Michael Gaziano, Kelly Cho, Katherine P. Liao, Junwei Lu, Tianxi Cai

J. Biomed. Informatics, 2022

Scalable relevance ranking algorithm via semantic similarity assessment improves efficiency of medical chart review.

Tianrun Cai, Zeling He, Chuan Hong, Yichi Zhang, Yuk-Lam Ho, Jacqueline Honerlaw, Alon Geva, Vidul Ayakulangara Panickan, Amanda King, David R. Gagnon, J. Michael Gaziano, Kelly Cho, Katherine P. Liao, Tianxi Cai

J. Biomed. Informatics, 2022

Binary acronym disambiguation in clinical notes from electronic health records with an application in computational phenotyping.

Nicholas B. Link, Sicong Huang, Tianrun Cai, Jiehuan Sun, Kumar Dahal, Lauren Costa, Kelly Cho, Katherine P. Liao, Tianxi Cai, Chuan Hong

Int. J. Medical Informatics, 2022

Knowledge-Driven Online Multimodal Automated Phenotyping System.

Molei Liu, Sara Morini, Xin Xiong, Chuan Hong, Clara-Lea Bonzel, Vidul Ayakulangara Panickan, Everett Neil Rush, Yuk-Lam Ho, Kelly Cho, J. Michael Gaziano, Katherine P. Liao, Tianxi Cai, Tianrun Cai

Proceedings of the AMIA 2022, 2022

2021

Clinical knowledge extraction via sparse embedding regression (KESER) with multi-center large scale electronic health record data.

Chuan Hong, Everett Neil Rush, Molei Liu, Doudou Zhou, Jiehuan Sun, Aaron Sonabend W., Victor M. Castro, Petra Schubert, Vidul Ayakulangara Panickan, Tianrun Cai, Lauren Costa, Zeling He, Nicholas B. Link, Ronald G. Hauser, J. Michael Gaziano, Shawn N. Murphy, George Ostrouchov, Yuk-Lam Ho, Edmon Begoli, Junwei Lu, Kelly Cho, Katherine P. Liao, Tianxi Cai

npj Digit. Medicine, 2021

ATLAS: an automated association test using probabilistically linked health records with application to genetic studies.

Harrison G. Zhang, Boris P. Hejblum, Griffin M. Weber, Nathan P. Palmer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Katherine P. Liao, Isaac S. Kohane, Tianxi Cai

J. Am. Medical Informatics Assoc., 2021

2019

EXTraction of EMR numerical data: an efficient and generalizable tool to EXTEND clinical research.

Tianrun A. Cai, Luwan Zhang, Nicole Yang, Kanako K. Kumamaru, Frank J. Rybicki, Tianxi Cai, Katherine P. Liao

BMC Medical Informatics Decis. Mak., 2019

Automated grouping of medical codes via multiview banded spectral clustering.

Luwan Zhang, Yichi Zhang, Tianrun A. Cai, Yuri Ahuja, Zeling He, Yuk-Lam Ho, Andrew Beam, Kelly Cho, Robert J. Carroll, Joshua C. Denny, Isaac S. Kohane, Katherine P. Liao, Tianxi Cai

J. Biomed. Informatics, 2019

Feature extraction for phenotyping from semantic and knowledge resources.

Wenxin Ning, Stephanie Chan, Andrew Beam, Ming Yu, Alon Geva, Katherine P. Liao, Mary Mullen, Kenneth D. Mandl, Isaac S. Kohane, Tianxi Cai, Sheng Yu

J. Biomed. Informatics, 2019

High-throughput multimodal automated phenotyping (MAP) with application to PheWAS.

Katherine P. Liao, Jiehuan Sun, Tianrun A. Cai, Nicholas B. Link, Chuan Hong, Jie Huang, Jennifer E. Huffman, Jessica L. Gronsbell, Yichi Zhang, Yuk-Lam Ho, Victor M. Castro, Vivian S. Gainer, Shawn N. Murphy, Christopher J. O'Donnell, J. Michael Gaziano, Kelly Cho, Peter Szolovits, Isaac S. Kohane, Sheng Yu

J. Am. Medical Informatics Assoc., 2019

2018

Enabling phenotypic big data with PheNorm.

Sheng Yu, Yumeng Ma, Jessica L. Gronsbell, Tianrun A. Cai, Ashwin N. Ananthakrishnan, Vivian S. Gainer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Isaac S. Kohane, Katherine P. Liao, Tianxi Cai

J. Am. Medical Informatics Assoc., 2018

PheProb: probabilistic phenotyping using diagnosis codes to improve power for genetic association studies.

Jennifer A. Sinnott, Fiona Cai, Sheng Yu, Boris P. Hejblum, Chuan Hong, Isaac S. Kohane, Katherine P. Liao

J. Am. Medical Informatics Assoc., 2018

High-Throughput Multimodal Automated Phenotyping (MAP) Incorporating Natural Language Processing with Application to PheWAS.

Katherine P. Liao, Jiehuan Sun, Tianrun A. Cai, Nicholas B. Link, Chuan Hong, Jie Huang, Jennifer E. Huffman, Jessica L. Gronsbell, Lauren Costa, Victor M. Castro, Vivian S. Gainer, Shawn N. Murphy, J. Michael Gaziano, Kelly Cho, Peter Szolovits, Isaac S. Kohane, Sheng Yu, Tianxi Cai

Proceedings of the AMIA 2018, 2018

2017

Surrogate-assisted feature extraction for high-throughput phenotyping.

Sheng Yu, Abhishek Chakrabortty, Katherine P. Liao, Tianrun A. Cai, Ashwin N. Ananthakrishnan, Vivian S. Gainer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Isaac S. Kohane, Tianxi Cai

J. Am. Medical Informatics Assoc., 2017

High-throughput Phenotyping via Denoised Normal Mixture Transformation.

Sheng Yu, Yumeng Ma, Jessica L. Gronsbell, Katherine P. Liao, Tianrun A. Cai, Ashwin N. Ananthakrishnan, Vivian S. Gainer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Isaac S. Kohane, Tianxi Cai

Proceedings of the AMIA 2017, 2017

Improving EHR Chart Review Efficiency via Semantic Similarity Assessment.

Tianrun A. Cai, Andrew Beam, Stephanie Chan, Jacqueline Honerlaw, Yichi Zhang, David R. Gagnon, Kelly Cho, J. Michael Gaziano, Katherine P. Liao, Tianxi Cai

Proceedings of the AMIA 2017, 2017

2015

Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources.

Sheng Yu, Katherine P. Liao, Stanley Y. Shaw, Vivian S. Gainer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Isaac S. Kohane, Tianxi Cai

J. Am. Medical Informatics Assoc., 2015

Demonstrating the Advantages of Applying Data Mining Techniques on Time-Dependent Electronic Medical Records.

Uri Kartoun, Vishesh Kumar, Su-Chun Cheng, Sheng Yu, Katherine P. Liao, Elizabeth W. Karlson, Ashwin N. Ananthakrishnan, Zongqi Xia, Vivian S. Gainer, Andrew Cagan, Guergana Savova, Pei J. Chen, Shawn N. Murphy, Susanne E. Churchill, Isaac S. Kohane, Peter Szolovits, Tianxi Cai, Stanley Y. Shaw

Proceedings of the AMIA 2015, 2015

2014

PheWAS and Genetics Define Subphenotypes in Drug Response.

Robert J. Carroll, Jeremy L. Warner, Anne E. Eyler, Charles Moore, Jayanth Doss, Katherine P. Liao, Robert M. Plenge, Joshua C. Denny

Proceedings of the AMIA 2014, 2014

2012

Portability of an algorithm to identify rheumatoid arthritis in electronic health records.

Robert J. Carroll, William K. Thompson, Anne E. Eyler, Arthur M. Mandelin, Tianxi Cai, Raquel M. Zink, Jennifer A. Pacheco, Chad S. Boomershine, Thomas A. Lasko, Hua Xu, Elizabeth W. Karlson, Raúl G. Pérez, Vivian S. Gainer, Shawn N. Murphy, Eric M. Ruderman, Richard M. Pope, Robert M. Plenge, Abel N. Kho, Katherine P. Liao, Joshua C. Denny

J. Am. Medical Informatics Assoc., 2012

Using PheWAS to Assess Pleiotropy of Genetic Risk Scores for Rheumatoid Arthritis and Coronary Artery Disease in the eMERGE Network.

Robert J. Carroll, Katherine P. Liao, Anne E. Eyler, Lisa Bastarache, Dana C. Crawford, Peggy L. Peissig, Jyotishman Pathak, David Carrell, Abel N. Kho, Rongling Li, Daniel R. Masys, Gail P. Jarvik, Christopher G. Chute, Rex L. Chisholm, Eric B. Larson, Catherine A. McCarty, Iftikhar J. Kullo

Proceedings of the AMIA 2012, 2012