Karsten Rippe

According to our database, Karsten Rippe authored at least 16 papers between 2012 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2020

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.

Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj, Julian M. Hess, Randi Istrup Juul, Ziao Lin, Lars Feuerbach, Radhakrishnan Sabarinathan, Tobias Madsen, Jaegil Kim, Loris Mularoni, Shimin Shuai, Andrés Lanzós, Carl Herrmann, Yosef E. Maruvka, Ciyue Shen, Samirkumar B. Amin, Pratiti Bandopadhayay, Johanna Bertl, Keith A. Boroevich, John Busanovich, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, David Craft, Priyanka Dhingra, Klev Diamanti, Nuno A. Fonseca, Abel Gonzalez-Perez, Qianyun Guo, Mark P. Hamilton, Nicholas J. Haradhvala, Chen Hong, Keren Isaev, Todd A. Johnson, Malene Juul, André Kahles, Abdullah Kahraman, Youngwook Kim, Jan Komorowski, Kiran Kumar, Sushant Kumar, Donghoon Lee, Kjong-Van Lehmann, Yilong Li, Eric Minwei Liu, Lucas Lochovsky, Keunchil Park, Oriol Pich, Nicola D. Roberts, Gordon Saksena, Steven E. Schumacher, Nikos Sidiropoulos, Lina Sieverling, Nasa Sinnott-Armstrong, Chip Stewart, David Tamborero, Jose M. C. Tubio, Husen M. Umer, Liis Uusküla-Reimand, Claes Wadelius, Lina Wadi, Xiaotong Yao, Cheng-Zhong Zhang, Jing Zhang, James E. Haber, Asger Hobolth, Marcin Imielinski, Manolis Kellis, Michael S. Lawrence, Christian von Mering, Hidewaki Nakagawa, Benjamin J. Raphael, Mark A. Rubin, Chris Sander, Lincoln D. Stein, Joshua M. Stuart, Tatsuhiko Tsunoda, David A. Wheeler, Rory Johnson, Jüri Reimand, Mark Gerstein, Ekta Khurana, Peter J. Campbell, Núria López-Bigas, Gary D. Bader, Jonathan Barenboim, Rameen Beroukhim, Søren Brunak, Ken Chen, Jung Kyoon Choi, Jordi Deu-Pons, J. Lynn Fink, Joan Frigola, Carlo Gambacorti Passerini, Dale W. Garsed, Gad Getz, Ivo Glynne Gut, David Haan, Arif Ozgun Harmanci, Mohamed Helmy, Ermin Hodzic, José M. G. Izarzugaza, Jong K. Kim, Jan O. Korbel, Erik Larsson, Shantao Li, Xiaotong Li, Shaoke Lou, Kathleen Marchal, Iñigo Martincorena, Alexander Martínez-Fundichely, Patrick D. McGillivray, William Meyerson, Ferran Muiños, Marta Paczkowska, Kiejung Park, Jakob Skou Pedersen, Tirso Pons, Sergio Pulido-Tamayo, Iker Reyes-Salazar, Matthew A. Reyna, Carlota Rubio-Perez, Süleyman Cenk Sahinalp, Leonidas Salichos, Mark Shackleton, Raunak Shrestha, Alfonso Valencia, Miguel Vazquez, Lieven P. C. Verbeke, Jiayin Wang, Jonathan Warrell, Sebastian M. Waszak, Joachim Weischenfeldt, Guanming Wu, Jun Yu, Xuanping Zhang, Yan Zhang, Zhongming Zhao, Lihua Zou, Kadir C. Akdemir, Eva G. Alvarez, Adrian Baez-Ortega, Paul C. Boutros, David D. L. Bowtell, Benedikt Brors, Kathleen H. Burns, Kin Chan, Isidro Cortés-Ciriano, Ana Dueso-Barroso, Andrew J. Dunford, Paul A. Edwards, Xavier Estivill, Dariush Etemadmoghadam, Milana Frenkel-Morgenstern, Dmitry A. Gordenin, Barbara Hutter, David T. W. Jones, Young Seok Ju, Marat D. Kazanov, Leszek J. Klimczak, Youngil Koh, Eunjung Alice Lee, Jake June-Koo Lee, Andy G. Lynch, Geoff MacIntyre, Florian Markowetz, Matthew Meyerson, Satoru Miyano, Fabio C. P. Navarro, Stephan Ossowski, Peter J. Park, John V. Pearson, Montserrat Puiggròs, Karsten Rippe, Steven A. Roberts, Bernardo Rodriguez-Martin, Ralph Scully, David Torrents, Izar Villasante, Nicola Waddell, Jeremiah A. Wala, Lixing Yang, Sung-Soo Yoon, Jorge Zamora

Nat., 2020

2019

GRUU-Net: Integrated convolutional and gated recurrent neural network for cell segmentation.

Thomas Wollmann, Manuel Gunkel, Inn Chung, Holger Erfle, Karsten Rippe, Karl Rohr

Medical Image Anal., 2019

Hyperparameter optimization for image analysis: application to prostate tissue images and live cell data of virus-infected cells.

Christian Ritter, Thomas Wollmann, Patrick Bernhard, Manuel Gunkel, Delia M. Braun, Ji Young Lee, Jan Meiners, Ronald Simon, Guido Sauter, Holger Erfle, Karsten Rippe, Ralf Bartenschlager, Karl Rohr

Int. J. Comput. Assist. Radiol. Surg., 2019

Modelling TERT regulation across 19 different cancer types based on the MIPRIP 2.0 gene regulatory network approach.

Alexandra Poos, Theresa Kordaß, Amol Kolte, Volker Ast, Marcus Oswald, Karsten Rippe, Rainer König

BMC Bioinform., 2019

TelomereHunter - in silico estimation of telomere content and composition from cancer genomes.

Lars Feuerbach, Lina Sieverling, Katharina I. Deeg, Philip Ginsbach, Barbara Hutter, Ivo Buchhalter, Paul A. Northcott, Sadaf S. Mughal, Priya Chudasama, Hanno Glimm, Claudia Scholl, Peter Lichter, Stefan Fröhling, Stefan M. Pfister, David T. W. Jones, Karsten Rippe, Benedikt Brors

BMC Bioinform., 2019

Black-Box Hyperparameter Optimization for Nuclei Segmentation in Prostate Tissue Images.

Thomas Wollmann, Patrick Bernhard, Manuel Gunkel, Delia M. Braun, Jan Meiners, Ronald Simon, Guido Sauter, Holger Erfle, Karsten Rippe, Karl Rohr

Proceedings of the Bildverarbeitung für die Medizin 2019 - Algorithmen - Systeme, 2019

2018

Bayesian joint super-resolution, deconvolution, and denoising of images with Poisson-Gaussian noise.

Qi Gao, Simon Eck, Jessica Matthias, Inn Chung, Jessica Engelhardt, Karsten Rippe, Karl Rohr

Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Comparison of segmentation methods for tissue microscopy images of glioblastoma cells.

D. Baltissen, Thomas Wollmann, Manuel Gunkel, Inn Chung, Holger Erfle, Karsten Rippe, Karl Rohr

Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Multi-channel Deep Transfer Learning for Nuclei Segmentation in Glioblastoma Cell Tissue Images.

Thomas Wollmann, Julia Ivanova, Manuel Gunkel, Inn Chung, Holger Erfle, Karsten Rippe, Karl Rohr

Proceedings of the Bildverarbeitung für die Medizin 2018 - Algorithmen - Systeme, 2018

2016

A spherical harmonics intensity model for 3D segmentation and 3D shape analysis of heterochromatin foci.

Simon Eck, Stefan Wörz, Katharina Müller-Ott, Matthias Hahn, Andreas Biesdorf, Gunnar Schotta, Karsten Rippe, Karl Rohr

Medical Image Anal., 2016

2014

3D shape analysis of heterochromatin foci based on a 3D spherical harmonics intensity model.

Simon Eck, Stefan Wörz, Katharina Müller-Ott, Matthias Hahn, Gunnar Schotta, Karsten Rippe, Karl Rohr

Proceedings of the Medical Imaging 2014: Image Processing, 2014

2013

Modeling nucleosome position distributions from experimental nucleosome positioning maps.

Robert Schöpflin, Vladimir B. Teif, Oliver Müller, Christin Weinberg, Karsten Rippe, Gero Wedemann

Bioinform., 2013

A 3D intensity model based on spherical harmonics for automatic 3D segmentation of heterochromatin foci.

Simon Eck, Karl Rohr, Andreas Biesdorf, Katharina Müller-Ott, Karsten Rippe, Stefan Wörz

Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Segmentation of Heterochromatin Foci Using a 3D Spherical Harmonics Intensity Model.

Simon Eck, Stefan Wörz, Andreas Biesdorf, Katharina Müller-Ott, Karsten Rippe, Karl Rohr

Proceedings of the Bildverarbeitung für die Medizin 2013 - Algorithmen - Systeme, 2013

2012

Calculating transcription factor binding maps for chromatin.

Vladimir B. Teif, Karsten Rippe

Briefings Bioinform., 2012

Combined Model-Based and Region-Adaptive 3D Segmentation and 3D Co-Localization Analysis of Heterochromatin Foci.

Simon Eck, Karl Rohr, Katharina Müller-Ott, Karsten Rippe, Stefan Wörz

Proceedings of the Bildverarbeitung für die Medizin 2012 - Algorithmen - Systeme, 2012