Karl Rohr

Orcid: 0000-0001-7673-0999

According to our database1, Karl Rohr authored at least 253 papers between 1989 and 2024.

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Bibliography

2024
Multi-detector fusion and Bayesian smoothing for tracking viral and chromatin structures.
Medical Image Anal., 2024

Bacteria Tracking and Division Detection Using Graph Neural Networks.
Proceedings of the IEEE International Symposium on Biomedical Imaging, 2024

Robust Graph Pruning for Efficient Segmentation and Cluster Splitting of Cell Nuclei Using Deformable Shape Models.
Proceedings of the IEEE International Symposium on Biomedical Imaging, 2024

Transformer-Based Neural Network for Joint Affine and Non-Rigid Registration of Temporal Live Cell Microscopy Images.
Proceedings of the IEEE International Symposium on Biomedical Imaging, 2024

2023
Superadditivity and Convex Optimization for Globally Optimal Cell Segmentation Using Deformable Shape Models.
IEEE Trans. Pattern Anal. Mach. Intell., March, 2023

Multi-Channel Colocalization Analysis and Visualization of Viral Proteins in Fluorescence Microscopy Images.
IEEE Access, 2023

Deep Learning Method for Probabilistic Particle Detection and Tracking in Fluorescence Microscopy Images.
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023

2022
CellCentroidFormer: Combining Self-attention and Convolution for Cell Detection.
Proceedings of the Medical Image Understanding and Analysis - 26th Annual Conference, 2022

Non-rigid registration of temporal live cell microscopy image sequences using deep learning.
Proceedings of the Medical Imaging 2022: Image Processing, 2022

EfficientCellSeg: Efficient Volumetric Cell Segmentation Using Context Aware Pseudocoloring.
Proceedings of the International Conference on Medical Imaging with Deep Learning, 2022

Deep Neural Network for Combined Particle Tracking and Colocalization Analysis in Two-Channel Microscopy Images.
Proceedings of the 19th IEEE International Symposium on Biomedical Imaging, 2022

Deep Neural Network for 3D Particle Detection in 3D Fluorescence Microscopy Images via Density Map Regression.
Proceedings of the 19th IEEE International Symposium on Biomedical Imaging, 2022

Quantifying Newly Appearing Replication FOCI in Cell Nuclei Based on 3d Non-Rigid Registration.
Proceedings of the 19th IEEE International Symposium on Biomedical Imaging, 2022

Denoisereg: Unsupervised Joint Denoising and Registration of Time-Lapse Live Cell Microscopy Images Using Deep Learning.
Proceedings of the 19th IEEE International Symposium on Biomedical Imaging, 2022

A Framework for Registration of Multi-modal Spatial Transcriptomics Data.
Proceedings of the Pattern Recognition and Artificial Intelligence, 2022

Unsupervised Cell Segmentation in Fluorescence Microscopy Images via Self-supervised Learning.
Proceedings of the Pattern Recognition and Artificial Intelligence, 2022

2021
Deep Consensus Network: Aggregating predictions to improve object detection in microscopy images.
Medical Image Anal., 2021

Deep probabilistic tracking of particles in fluorescence microscopy images.
Medical Image Anal., 2021

Data fusion and smoothing for probabilistic tracking of viral structures in fluorescence microscopy images.
Medical Image Anal., 2021

Multiple Hypothesis Tracking With Integrated Cell Division Detection.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

Deep Learning For Particle Detection And Tracking In Fluorescence Microscopy Images.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

Multi-Object Dynamic Memory Network For Cell Tracking in Time-Lapse Microscopy Images.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

Non-Rigid Registration Of Live Cell Nuclei Using Global Optical Flow with Elasticity Constraints.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

2020
A Recurrent Neural Network for Particle Tracking in Microscopy Images Using Future Information, Track Hypotheses, and Multiple Detections.
IEEE Trans. Image Process., 2020

Tracking of Particles in Fluorescence Microscopy Images Using a Spatial Distance Model for Brownian Motion.
Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

Pan-Cancer Prognosis Prediction Using Multimodal Deep Learning.
Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

Deep Learning Particle Detection for Probabilistic Tracking in Fluorescence Microscopy Images.
Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

Optimizing Particle Detection by Colocalization Analysis in Multi-Channel Fluorescence Microscopy Images.
Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

Inception Capsule Network for Retinal Blood Vessel Segmentation and Centerline Extraction.
Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

Deep Segmentation of Bacteria at Different Stages of the Life Cycle.
Proceedings of the Bildverarbeitung für die Medizin 2020 - Algorithmen - Systeme, 2020

2019
A Global Method for Non-Rigid Registration of Cell Nuclei in Live Cell Time-Lapse Images.
IEEE Trans. Medical Imaging, 2019

GRUU-Net: Integrated convolutional and gated recurrent neural network for cell segmentation.
Medical Image Anal., 2019

Predicting breast tumor proliferation from whole-slide images: The TUPAC16 challenge.
Medical Image Anal., 2019

Globally optimal segmentation of cell nuclei in fluorescence microscopy images using shape and intensity information.
Medical Image Anal., 2019

Hyperparameter optimization for image analysis: application to prostate tissue images and live cell data of virus-infected cells.
Int. J. Comput. Assist. Radiol. Surg., 2019

Detnet: Deep Neural Network For Particle Detection In Fluorescence Microscopy Images.
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

Black-Box Hyperparameter Optimization for Nuclei Segmentation in Prostate Tissue Images.
Proceedings of the Bildverarbeitung für die Medizin 2019 - Algorithmen - Systeme, 2019

2018
Non-Rigid Contour-Based Registration of Cell Nuclei in 2-D Live Cell Microscopy Images Using a Dynamic Elasticity Model.
IEEE Trans. Medical Imaging, 2018

Progressive Minimal Path Method for Segmentation of 2D and 3D Line Structures.
IEEE Trans. Pattern Anal. Mach. Intell., 2018

Rigid and non-rigid registration of polarized light imaging data for 3D reconstruction of the temporal lobe of the human brain at micrometer resolution.
NeuroImage, 2018

Predicting breast tumor proliferation from whole-slide images: the TUPAC16 challenge.
CoRR, 2018

Deep Particle Tracker: Automatic Tracking of Particles in Fluorescence Microscopy Images Using Deep Learning.
Proceedings of the Deep Learning in Medical Image Analysis - and - Multimodal Learning for Clinical Decision Support, 2018

Towards Ultra-High Resolution 3D Reconstruction of a Whole Rat Brain from 3D-PLI Data.
Proceedings of the Connectomics in NeuroImaging - Second International Workshop, 2018

Adversarial domain adaptation to improve automatic breast cancer grading in lymph nodes.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Two-filter probabilistic data association for tracking of virus particles in fluorescence microscopy images.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Segmentation of cell nuclei using intensity-based model fitting and sequential convex programming.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Multi-channel boosting and multi-scale localization-based tracking of dense malarial sporozoites.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Bayesian joint super-resolution, deconvolution, and denoising of images with Poisson-Gaussian noise.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Comparison of segmentation methods for tissue microscopy images of glioblastoma cells.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Scale-bundle spline-based non-rigid registration for handling fissures.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Evaluating local features in high-resolution 3D-PLI data.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Multi-channel Deep Transfer Learning for Nuclei Segmentation in Glioblastoma Cell Tissue Images.
Proceedings of the Bildverarbeitung für die Medizin 2018 - Algorithmen - Systeme, 2018

Comparison of Self-similarity Measures for Multi-modal Non-rigid Registration of 3D-PLI Brain Images.
Proceedings of the Bildverarbeitung für die Medizin 2018 - Algorithmen - Systeme, 2018

2017
Diffeomorphic Multi-Frame Non-Rigid Registration of Cell Nuclei in 2D and 3D Live Cell Images.
IEEE Trans. Image Process., 2017

Automatic breast cancer grading in lymph nodes using a deep neural network.
CoRR, 2017

Deep residual Hough voting for mitotic cell detection in histopathology images.
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017

Colocalization analysis and particle tracking in multi-channel fluorescence microscopy images.
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017

Segmentation of cell structures using Model-Based Set Covering with iterative reweighting.
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017

Optical flow-based non-rigid registration of cell nuclei: Global model with adaptively weighted regularization.
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017

Elastic registration of high-resolution 3D PLI data of the human brain.
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017

Registration of ultra-high resolution 3D PLI data of human brain sections to their corresponding high-resolution counterpart.
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017

Geometric Image Labeling with Global Convex Labeling Constraints.
Proceedings of the Energy Minimization Methods in Computer Vision and Pattern Recognition, 2017

Automatic Grading of Breast Cancer Whole-Slide Histopathology Images.
Proceedings of the Bildverarbeitung für die Medizin 2017 - Algorithmen - Systeme, 2017

Spline-Based Multimodal Image Registration of 3D PLI Data of the Human Brain.
Proceedings of the Bildverarbeitung für die Medizin 2017 - Algorithmen - Systeme, 2017

2016
Automatic 3D Segmentation and Quantification of Lenticulostriate Arteries from High-Resolution 7 Tesla MRA Images.
IEEE Trans. Image Process., 2016

A spherical harmonics intensity model for 3D segmentation and 3D shape analysis of heterochromatin foci.
Medical Image Anal., 2016

Framework for quantitative evaluation of 3D vessel segmentation approaches using vascular phantoms in conjunction with 3D landmark localization and registration.
Proceedings of the Medical Imaging 2016: Image Processing, 2016

Direct combination of multi-scale detection and multi-frame association for tracking of virus particles in microscopy image data.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

FPGA-accelerated Richardson-Lucy deconvolution for 3D image data.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

2015
Tracking Multiple Particles in Fluorescence Time-Lapse Microscopy Images via Probabilistic Data Association.
IEEE Trans. Medical Imaging, 2015

Tracking Virus Particles in Fluorescence Microscopy Images Using Multi-Scale Detection and Multi-Frame Association.
IEEE Trans. Image Process., 2015

Non-rigid multi-frame registration of cell nuclei in live cell fluorescence microscopy image data.
Medical Image Anal., 2015

3D statistical models of the aorta and the supra-aortic branches.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

Tracking virus particles in fluorescence microscopy images via a particle Kalman filter.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

Motion analysis of receptors and ligands in high resolution fluorescence microscopy images.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

3D segmentation of vessels by incremental implicit polynomial fitting and convex optimization.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

Automatic Single-Cell Segmentation and Tracking of Bacterial Cells in Fluorescence Microscopy Images.
Proceedings of the Bildverarbeitung für die Medizin 2015, Algorithmen - Systeme, 2015

2014
Characterizing Protein Interactions Employing a Genome-Wide siRNA Cellular Phenotyping Screen.
PLoS Comput. Biol., 2014

Spline-Based Hybrid Image Registration using Landmark and Intensity Information based on Matrix-Valued Non-radial Basis Functions.
Int. J. Comput. Vis., 2014

A benchmark for comparison of cell tracking algorithms.
Bioinform., 2014

3D geometric analysis of the aorta in 3D MRA follow-up pediatric image data.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

3D shape analysis of heterochromatin foci based on a 3D spherical harmonics intensity model.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

Non-rigid contour-based temporal registration of 2D cell nuclei images using the Navier equation.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

Segmentation of cell nuclei in 3D microscopy images based on level set deformable models and convex minimization.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

Quantification of the Aortic Morphology in Follow-Up 3D-MRA Images of Children.
Proceedings of the Bildverarbeitung für die Medizin 2014, Algorithmen - Systeme, 2014

Cell Segmentation and Cell Splitting Based on Gradient Flow Tracking in Microscopic Images.
Proceedings of the Bildverarbeitung für die Medizin 2014, Algorithmen - Systeme, 2014

2013
Globally Optimal Curvature-Regularized Fast Marching for Vessel Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

A 3D intensity model based on spherical harmonics for automatic 3D segmentation of heterochromatin foci.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Segmentation of Heterochromatin Foci Using a 3D Spherical Harmonics Intensity Model.
Proceedings of the Bildverarbeitung für die Medizin 2013 - Algorithmen - Systeme, 2013

2012
Identifying Virus-Cell Fusion in Two-Channel Fluorescence Microscopy Image Sequences Based on a Layered Probabilistic Approach.
IEEE Trans. Medical Imaging, 2012

Segmentation and quantification of the aortic arch using joint 3D model-based segmentation and elastic image registration.
Medical Image Anal., 2012

Efficient globally optimal segmentation of cells in fluorescence microscopy images using level sets and convex energy functionals.
Medical Image Anal., 2012

Elastic registration based on matrix-valued spline functions and direct integration of landmarks and intensities.
Proceedings of the Medical Imaging 2012: Image Processing, 2012

Vessel segmentation using an iterative fast marching approach with directional prior.
Proceedings of the Medical Imaging 2012: Image Processing, 2012

Analysis of viral surfing based on fluorescence microscopy imaging and automatic tracking.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

Non-rigid multi-frame registration of live cell microscopy images.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

An extension of thin-plate splines for image registration with radial basis functions.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

Automatic human brain vessel segmentation from 3D 7 Tesla MRA images using fast marching with anisotropic directional prior.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

Tracking virus particles in fluorescence microscopy images using two-step multi-frame association.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

Tracking Virus Particles in Microscopy Images Using Multi-Frame Association.
Proceedings of the Bildverarbeitung für die Medizin 2012 - Algorithmen - Systeme, 2012

Cell Tracking for Automatic Migration and Proliferation Analysis in High-Throughput Screens.
Proceedings of the Bildverarbeitung für die Medizin 2012 - Algorithmen - Systeme, 2012

Combined Model-Based and Region-Adaptive 3D Segmentation and 3D Co-Localization Analysis of Heterochromatin Foci.
Proceedings of the Bildverarbeitung für die Medizin 2012 - Algorithmen - Systeme, 2012

Globally Minimal Path Method Using Dynamic Speed Functions Based on Progressive Wave Propagation.
Proceedings of the Computer Vision, 2012

2011
Nonrigid Registration of 2-D and 3-D Dynamic Cell Nuclei Images for Improved Classification of Subcellular Particle Motion.
IEEE Trans. Image Process., 2011

Normalizing for individual cell population context in the analysis of high-content cellular screens.
BMC Bioinform., 2011

Model-Based Segmentation and Motion Analysis of the Thoracic Aorta from 4D ECG-Gated CTA Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Fast Globally Optimal Segmentation of Cells in Fluorescence Microscopy Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

A generative MRF approach for automatic 3D segmentation of cerebral vasculature from 7 Tesla MRA images.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Quantification of frap experiments in live cell image sequences by combining segmentation and registration.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

3D segmentation and quantification of mouse embryonic stem cells in fluorescence microscopy images.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Tracking multiple particles in fluorescence microscopy images via probabilistic data association.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Model-Based Quantification of Small Tubular Structures in 3D Vascular Images.
Proceedings of the Bildverarbeitung für die Medizin 2011: Algorithmen - Systeme, 2011

Aortic Arch Quantification using Efficient Joint Segmentation and Registration.
Proceedings of the Bildverarbeitung für die Medizin 2011: Algorithmen - Systeme, 2011

2010
3D Geometry-Based Quantification of Colocalizations in Multichannel 3D Microscopy Images of Human Soft Tissue Tumors.
IEEE Trans. Medical Imaging, 2010

3-D Quantification of the Aortic Arch Morphology in 3-D CTA Data for Endovascular Aortic Repair.
IEEE Trans. Biomed. Eng., 2010

Detecting host factors involved in virus infection by observing the clustering of infected cells in siRNA screening images.
Bioinform., 2010

A new 3D tubular intensity model for quantification of thin vessels in 3D tomographic images.
Proceedings of the Medical Imaging 2010: Image Processing, 2010

Combined Model-Based Segmentation and Elastic Registration for Accurate Quantification of the Aortic Arch.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Model-Based Segmentation and Colocalization Quantification in 3D Microscopy Images.
Proceedings of the Bildverarbeitung für die Medizin 2010 - Algorithmen - Systeme, 2010

Automatic Analysis of Live Cell Image Sequences to determine Temporal Mitotic Phenotypes.
Proceedings of the Bildverarbeitung für die Medizin 2010 - Algorithmen - Systeme, 2010

2009
Deterministic and probabilistic approaches for tracking virus particles in time-lapse fluorescence microscopy image sequences.
Medical Image Anal., 2009

Segmentation of 3D tubular structures based on 3D intensity models and particle filter tracking.
Proceedings of the Medical Imaging 2009: Image Processing, 2009

Experimental comparison of landmark-based methods for 3D elastic registration of pre- and postoperative liver CT data.
Proceedings of the Medical Imaging 2009: Visualization, 2009

Hybrid Spline-Based Multimodal Registration Using Local Measures for Joint Entropy and Mutual Information.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

Identifying Fusion Events in Fluorescence Microscopy Images.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Automatic Detection of Supraaortic Branches and Model-Based Segmentation of the Aortic Arch from 3D CTA Images.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Haralick's Texture Features Computation Accelerated by GPUs for Biological Applications.
Proceedings of the Modeling, 2009

3D Segmentation and Quantification of the Aortic Arch for Endovascular Aortic Repair.
Proceedings of the Bildverarbeitung für die Medizin 2009: Algorithmen - Systeme, 2009

Probabilistic Tracking and Model-Based Segmentation of 3D Tubular Structures.
Proceedings of the Bildverarbeitung für die Medizin 2009: Algorithmen - Systeme, 2009

Landmark-Based 3D Elastic Registration of Pre- and Postoperative Liver CT Data.
Proceedings of the Bildverarbeitung für die Medizin 2009: Algorithmen - Systeme, 2009

Evaluation of Approaches for Tracking Virus Particles in Fluorescence Microscopy Images.
Proceedings of the Bildverarbeitung für die Medizin 2009: Algorithmen - Systeme, 2009

Hybrid Spline-Based Multimodal Registration Using a Local Measure for Mutual Information.
Proceedings of the Bildverarbeitung für die Medizin 2009: Algorithmen - Systeme, 2009

2008
Nonrigid Registration of 3-D Multichannel Microscopy Images of Cell Nuclei.
IEEE Trans. Image Process., 2008

Cramér-Rao Bounds for Estimating the Position and Width of 3D Tubular Structures and Analysis of Thin Structures with Application to Vascular Images.
J. Math. Imaging Vis., 2008

Physics-based elastic registration using non-radial basis functions and including landmark localization uncertainties.
Comput. Vis. Image Underst., 2008

Hybrid physics-based elastic image registration using approximating splines.
Proceedings of the Medical Imaging 2008: Image Processing, 2008

Quantification of the aortic arch morphology in 3D CTA images for endovascular aortic repair (EVAR).
Proceedings of the Medical Imaging 2008: Visualization, 2008

Geometric alignment of 2D gel electrophoresis images using physics-based elastic registration.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

Probabilistic tracking of virus particles in fluorescence microscopy images.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

Geometric Alignment of 2D Gel Electrophoresis Images.
Proceedings of the Bildverarbeitung für die Medizin 2008, 2008

Automated Analysis of siRNA Screens of Virus Infected Cells Based on Immunofluorescence Microscopy.
Proceedings of the Bildverarbeitung für die Medizin 2008, 2008

Probabilistic Tracking of Virus Particles in Fluorescence Microscopy Image Sequences.
Proceedings of the Bildverarbeitung für die Medizin 2008, 2008

2007
Segmentation and Quantification of Human Vessels Using a 3-D Cylindrical Intensity Model.
IEEE Trans. Image Process., 2007

Theoretical Limits of Localizing 3-D Landmarks and Features.
IEEE Trans. Biomed. Eng., 2007

Spline-based elastic image registration using solutions of the Navier equation.
Proceedings of the Medical Imaging 2007: Image Processing, 2007

Model-based segmentation and quantification of fluorescent bacteria in 3D microscopy live cell images.
Proceedings of the Medical Imaging 2007: Image Processing, 2007

Compensation of global movement for improved tracking of cells in time-lapse confocal microscopy image sequences.
Proceedings of the Medical Imaging 2007: Image Processing, 2007

Variability Analysis of the Large-Scale Structure of Interphase Chromatin Fiber Based on Statistical Shape Theory.
Proceedings of the Advances in Mass Data Analysis of Signals and Images in Medicine, 2007

Non-Rigid Temporal Registration of 2d and 3d Multi-Channel Microscopy Image Sequences of Human Cells.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Determination of Mitotic Delays in 3d Fluorescence Microscopy Images of Human Cells Using an Error-Correcting Finite State Machine.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Tracking of Virus Particles in Time-Lapse Fluorescence Microscopy Image Sequences.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Analyzing the Variability of the 3D Structure of Chromatin Fiber Using Statistical Shape Theory.
Proceedings of the Pattern Recognition, 2007

Spline-Based Elastic Image Registration with Matrix-Valued Basis Functions Using Landmark and Intensity Information.
Proceedings of the Pattern Recognition, 2007

Geometrical probability approach for analysis of 3D chromatin structure in interphase cell nuclei.
Proceedings of the 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2007

Stochastical Analysis of Finite Point Sampling of 3D Chromatin Fiber in Interphase Cell Nuclei.
Proceedings of the Bioinformatics Research and Development, First International Conference, 2007

Hybrid Spline-Based Elastic Image Registration Using Analytic Solutions of the Navier Equation.
Proceedings of the Bildverarbeitung für die Medizin 2007, 2007

Non-rigid Temporal Alignment of 2D and 3D Multi-channel Microscopy Image Sequences of Human Cells.
Proceedings of the Bildverarbeitung für die Medizin 2007, 2007

On Validation of Non-physical Techniques for Elastic Image Registration.
Proceedings of the Bildverarbeitung für die Medizin 2007, 2007

2006
Localization of anatomical point landmarks in 3D medical images by fitting 3D parametric intensity models.
Medical Image Anal., 2006

A comparison between BEM and FEM for elastic registration of medical images.
Image Vis. Comput., 2006

Topological analysis of 3D cell nuclei using finite element template-based spherical mapping.
Proceedings of the Medical Imaging 2006: Image Processing, 2006

Non-rigid Registration of 3D Multi-channel Microscopy Images of Cell Nuclei.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

Limits on Estimating the Width of Thin Tubular Structures in 3D Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

Physics-Based Elastic Image Registration Using Splines and Including Landmark Localization Uncertainties.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

Automated Analysis of the Mitotic Phases of Human Cells in 3D Fluorescence Microscopy Image Sequences.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

High-precision localization and quantification of 3D tubular structures.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

Automated recognition of mitotic patterns in fluorescence microscopy images of human cells.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

First results of an automated model-based segmentation system for subcortical structures in human brain MRI data.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

Feature Selection for Evaluating Fluorescence Microscopy Images in Genome-Wide Cell Screens.
Proceedings of the 2006 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2006), 2006

Non-rigid Registration of 3D Microscopy Images for the Normalization of Different Cell Nuclei.
Proceedings of the Bildverarbeitung für die Medizin 2006, Algorithmen, Systeme, Anwendungen, Proceedings des Workshops vom 19., 2006

New Approximating Gaussian Elastic Body Splines for Landmark-Based Registration of Medical Images.
Proceedings of the Bildverarbeitung für die Medizin 2006, Algorithmen, Systeme, Anwendungen, Proceedings des Workshops vom 19., 2006

Limits on Estimating the Width of Thin Vessels in 3D Medical Images.
Proceedings of the Bildverarbeitung für die Medizin 2006, Algorithmen, Systeme, Anwendungen, Proceedings des Workshops vom 19., 2006

Automated Analysis of Mitotic Phenotypes in Fluorescence Microscopy Images of Human Cells.
Proceedings of the Bildverarbeitung für die Medizin 2006, Algorithmen, Systeme, Anwendungen, Proceedings des Workshops vom 19., 2006

3D Formnormalisierung von Zellkernen mit Hilfe einer elastischen Kugelabbildung.
Proceedings of the Bildverarbeitung für die Medizin 2006, Algorithmen, Systeme, Anwendungen, Proceedings des Workshops vom 19., 2006

2005
A New Class of Elastic Body Splines for Nonrigid Registration of Medical Images.
J. Math. Imaging Vis., 2005

Development and validation of a multi-step approach to improved detection of 3D point landmarks in tomographic images.
Image Vis. Comput., 2005

Automatic Parameter Optimization for De-noising MR Data.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

Fundamental Limits in 3D Landmark Localization.
Proceedings of the Information Processing in Medical Imaging, 2005

Adaptive Model-Based Segmentation of Human Vessels from 3D MRA and CTA Data.
Proceedings of the Bildverarbeitung für die Medizin 2005, Algorithmen - Systeme, 2005

De-noising MRI Data - An Iterative Method for Filter Parameter Optimization.
Proceedings of the Bildverarbeitung für die Medizin 2005, Algorithmen - Systeme, 2005

Automatische, modellbasierte Segmentierung subkortikaler Areale aus MRT-Daten des menschlichen Gehirns: Erste Ergebnisse.
Proceedings of the Bildverarbeitung für die Medizin 2005, Algorithmen - Systeme, 2005

2004
Elastic registration of electrophoresis images using intensity information and point landmarks.
Pattern Recognit., 2004

A New 3D Parametric Intensity Model for Accurate Segmentation and Quantification of Human Vessels.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

Elastic Registration of Gel Electrophoresis Images Based on Landmarks and Intensities.
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004

3D Segmentation and Quantification of Human Vessels Based on a New 3D Parametric Intensity Model.
Proceedings of the Pattern Recognition, 26th DAGM Symposium, August 30, 2004

Automatic ROI Size Selection and Parameter Initialization for Model-Based Localization of 3D Anatomical Point Landmarks.
Proceedings of the Bildverarbeitung für die Medizin 2004, Algorithmen - Systeme, 2004

3D Parametric Intensity Models for Accurate Segmentation and Quantification of Human Arteries.
Proceedings of the Bildverarbeitung für die Medizin 2004, Algorithmen - Systeme, 2004

2003
Robust segmentation of tubular structures in 3-D medical images by parametric object detection and tracking.
IEEE Trans. Syst. Man Cybern. Part B, 2003

Spline-based elastic image registration: integration of landmark errors and orientation attributes.
Comput. Vis. Image Underst., 2003

Knowledge-based neurocomputing in medicine.
Artif. Intell. Medicine, 2003

3D Parametric Intensity Models for the Localization of Different Types of 3D Anatomical Point Landmarks in Tomographic Images.
Proceedings of the Pattern Recognition, 2003

Segmentation of Coronary Arteries of the Human Heart from 3D Medical Images.
Proceedings of the Bildverarbeitung für die Medizin 2003, Algorithmen - Systeme, 2003

2002
Coupling of fluid and elastic models for biomechanical simulations of brain deformations using FEM.
Medical Image Anal., 2002

Evaluation of 3D Operators for the Detection of Anatomical Point Landmarks in MR and CT Images.
Comput. Vis. Image Underst., 2002

Hybrid Optimization for 3D Landmark Extraction: Genetic Algorithms and Conjugate Gradient Method.
Proceedings of the Bildverarbeitung für die Medizin 2002: Algorithmen, 2002

2001
Landmark-Based Image Analysis - Using Geometric and Intensity Models
Computational Imaging and Vision 21, Springer, ISBN: 978-94-015-9787-6, 2001

Landmark-Based Elastic Registration Using Approximating Thin-Plate Splines.
IEEE Trans. Medical Imaging, 2001

Radial basis functions with compact support for elastic registration of medical images.
Image Vis. Comput., 2001

Using an Extended Hough Transform Combined with a Kalman Filter to Segment Tubular Structures in 3D Medical Images.
Proceedings of the 6th International Fall Workshop on Vision, Modeling, and Visualization, 2001

Improving the Robustness in Extracting 3D Point Landmarks from 3D Medical Images Using Parametric Deformable Models.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2001

Segmentation of Tubular Structures in 3D Images Using a Combination of the Hough Transform and a Kalman Filter.
Proceedings of the Pattern Recognition, 2001

Improving the Robustness in Extracting 3D Point Landmarks Based on Deformable Models.
Proceedings of the Pattern Recognition, 2001

Using Deformable Models for the Localization of 3D Anatomical Point Landmarks in 3D Tomographic Images.
Proceedings of the Bildverarbeitung für die Medizin 2001: Algorithmen, 2001

2000
Project IMAGINE: Landmark-Based Elastic Registration and Biomechanical Brain Modelling.
Künstliche Intell., 2000

Elastic Registration of Multimodal Medical Images: A Survey.
Künstliche Intell., 2000

Biomechanically based simulation of brain deformations for intraoperative image correction: coupling of elastic and fluid models.
Proceedings of the Medical Imaging 2000: Image Processing, 2000

Localization of 3D Anatomical Point Landmarks in 3D Tomographic Images Using Deformable Models.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2000

A New Approach to the Localization of 3D Anatomical Point Landmarks in Medical Images Based on Deformable Models.
Proceedings of the Mustererkennung 2000, 2000

Elastic Medical Image Registration Using Surface Landmarks with Automatic Finding of Correspondences.
Proceedings of the Bildverarbeitung für die Medizin 2000: Algorithmen, 2000

1999
Biomedical Modeling of the Human Head for Physically-based, Non-rigid Image Registration.
IEEE Trans. Medical Imaging, 1999

Extraction of 3d anatomical point landmarks based on invariance principles.
Pattern Recognit., 1999

Parameter-Free Elastic Deformation Approach for 2D and 3D Registration Using Prescribed Displacements.
J. Math. Imaging Vis., 1999

Performance of 3D differential operators for the detection of anatomical point landmarks in MR and CT images.
Proceedings of the Medical Imaging 1999: Image Processing, 1999

Nonrigid matching of tomographic images based on a biomechanical model of the human head.
Proceedings of the Medical Imaging 1999: Image Processing, 1999

Improving the Detection Performance in Semi-automatic Landmark Extraction.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1999

Approximating Thin-Plate Splines for Elastic Registration: Integration of Landmark Errors and Orientation Attributes.
Proceedings of the Information Processing in Medical Imaging, 1999

Intraoperative Image Correction Using a Biomechanical Model of the Human Head with Different Material Properties.
Proceedings of the Mustererkennung 1999, 1999

Elastic Registration of Medical Images Using Radial Basis Functions with Compact Support.
Proceedings of the 1999 Conference on Computer Vision and Pattern Recognition (CVPR '99), 1999

A Biomechanical Model of the Human Head for Elasitc Registration of MR-Images.
Proceedings of the Bildverarbeitung für die Medizin 1999: Algorithmen, 1999

Reducing False Detections in Extracting 3D Anatomical Point Landmarks.
Proceedings of the Bildverarbeitung für die Medizin 1999: Algorithmen, 1999

1998
Performance Characterization of Landmark Operators.
Proceedings of the Performance Characterization in Computer Vision [9. Theoretical Foundations of Computer Vision, 1998

Refined localization of three-dimensional anatomical point landmarks using multistep differential approaches.
Proceedings of the Medical Imaging 1998: Image Processing, 1998

Image Registration Based on Thin-Plate Splines and Local Estimates of Anisotropic Landmark Localization Uncertainties.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1998

Multi-Step Procedures for the Localization of 2D and 3D Point Landmarks and Automatic ROI Size Selection.
Proceedings of the Computer Vision, 1998

Untersuchung der Detektionsleistung von 3D-Operatoren zur Ermittlung von Punktlandmarken in MR- und CT-Bildern.
Proceedings of the Mustererkennung 1998, 20. DAGM-Symposium, Stuttgart, 29. September, 1998

Orientation Constraints in Point-Based Elastic Image Registration.
Proceedings of the Mustererkennung 1998, 20. DAGM-Symposium, Stuttgart, 29. September, 1998

Non-Rigid Image Registration Using a Parameter-Free Elastic Model.
Proceedings of the British Machine Vision Conference 1998, 1998

Ermittlung anatomischer Landmarken in tomographischen Bildern.
Proceedings of the Bildverarbeitung für die Medizin: Algorithmen, 1998

Theoretische und experimentelle Untersuchung eines Verfahrens zur Schätzung von Attributen der Grauwertkanten in 2D CT/MR-Bildern.
Proceedings of the Bildverarbeitung für die Medizin: Algorithmen, 1998

1997
On the Precision in Estimating the Location of Edges and Corners.
J. Math. Imaging Vis., 1997

On 3D differential operators for detecting point landmarks.
Image Vis. Comput., 1997

Model-Based Detection and Localization of Circular Landmarks in Aerial Images.
Int. J. Comput. Vis., 1997

Two-Step Parameter-Free Elastic Image Registration with Prescribed Point Displacements.
Proceedings of the Image Analysis and Processing, 9th International Conference, 1997

On the Localization of 3D Anatomical Point Landmarks in Medical Imagery Using Multi-step Differential Approaches.
Proceedings of the Mustererkennung 1997, 1997

1996
Point-Based Elastic Registration of Medical Image Data Using Approximating Thin-Plate Splines.
Proceedings of the Visualization in Biomedical Computing, 4th International Conference, 1996

Evaluation of corner extraction schemes using invariance methods.
Proceedings of the 13th International Conference on Pattern Recognition, 1996

Evaluierung von Differentialoperatoren zur Detektion charakteristischer Punkte in tomographischen Bildern.
Proceedings of the Mustererkennung 1996, 1996

Bildregistrierung mit interpolierenden "Thin-Plate Splines" und Bezüge zur linearen Elastizitätstheorie.
Proceedings of the Mustererkennung 1996, 1996

Nonrigid Registration of Medical Images Based on Anatomical Point Landmarks and Approximating Thin-Plate Splines.
Proceedings of the Bildverarbeitung für die Medizin: Algorithmen, 1996

1995
Integrating Vision and Language: Towards Automatic Description of Human Movements.
Proceedings of the KI-95: Advances in Artificial Intelligence, 1995

High-Precision Localization of Circular Landmarks in Aerial Images.
Proceedings of the Mustererkennung 1995, 1995

1994
Modellgestütztes Erkennen charakteristischer Strukturen in Bildern.
PhD thesis, 1994

Localization properties of direct corner detectors.
J. Math. Imaging Vis., 1994

Semi-algebraic solids in 3-space: a survey of modelling schemes and implications for view graphs.
Image Vis. Comput., 1994

1993
An efficient approach to the identification of characteristic intensity variations.
Image Vis. Comput., 1993

Lokalisierungseigenschaften direkter Ansätze zur Ermittlung von Grauwertecken.
Proceedings of the Mustererkennung 1993, 1993

Incremental recognition of pedestrians from image sequences.
Proceedings of the Conference on Computer Vision and Pattern Recognition, 1993

1992
Modelling and identification of characteristic intensity variations.
Image Vis. Comput., 1992

Recognizing corners by fitting parametric models.
Int. J. Comput. Vis., 1992

1990
Modellgestützte Bestimmung des Bewegungszustandes von Fußgängern in Realweltbildfolgen.
Proceedings of the Mustererkennung 1990, 1990

Über die Modellierung und Identifikation charakteristischer Grauwertverläufe in Realweltbildern.
Proceedings of the Mustererkennung 1990, 1990

Automatische Bestimmung der Trajektorien von sich bewegenden Objekten aus einer Bildfolge.
Proceedings of the Mustererkennung 1990, 1990

1989
Auf dem Wege zu modellgestütztem Erkennen von bewegten nicht-starren Körpern in Realweltbildfolgen.
Proceedings of the Mustererkennung 1989, 1989


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