Kapil Devkota

According to our database, Kapil Devkota authored at least 8 papers between 2020 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Approximate IsoRank for Scalable and Functionally Meaningful Cross-Species Alignments of Protein Interaction Networks.

Kapil Devkota, Anselm Blumer, Xiaozhe Hu, Lenore Cowen

J. Comput. Biol., 2024

Fast Approximate IsoRank for Scalable Global Alignment of Biological Networks.

Kapil Devkota, Anselm Blumer, Xiaozhe Hu, Lenore Cowen

Proceedings of the Research in Computational Molecular Biology, 2024

2023

TT3D: Leveraging precomputed protein 3D sequence models to predict protein-protein interactions.

Samuel Sledzieski, Kapil Devkota, Rohit Singh, Lenore Cowen, Bonnie Berger

Bioinform., October, 2023

2022

GLIDER: function prediction from GLIDE-based neighborhoods.

Kapil Devkota, Henri Schmidt, Matthew Werenski, James M. Murphy, Mert Erden, Victor Arsenescu, Lenore J. Cowen

Bioinform., 2022

Topsy-Turvy: integrating a global view into sequence-based PPI prediction.

Rohit Singh, Kapil Devkota, Samuel Sledzieski, Bonnie Berger, Lenore Cowen

Bioinform., 2022

Neighborhood embedding and re-ranking of disease genes with ADAGIO.

Mert Erden, Megan Gelement, Sarrah Hakimjee, Kyla Levin, Mary-Joy Sidhom, Kapil Devkota, Lenore J. Cowen

Proceedings of the BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7, 2022

2021

Diffusion State Distances: Multitemporal Analysis, Fast Algorithms, and Applications to Biological Networks.

Lenore Cowen, Kapil Devkota, Xiaozhe Hu, James M. Murphy, Kaiyi Wu

SIAM J. Math. Data Sci., 2021

2020

GLIDE: combining local methods and diffusion state embeddings to predict missing interactions in biological networks.

Kapil Devkota, James M. Murphy, Lenore J. Cowen

Bioinform., 2020