Kang Ning

Orcid: 0000-0003-3325-5387

Affiliations:
  • Huazhong University of Science and Technology, Wuhan, China
  • Chinese Academy of Sciences, Qingdao Institute of Bioenergy and Bioprocess Technology, China (former)
  • University of Michigan, Department of Pathology, Ann Arbor, MI, USA (former)
  • National University of Singapore (NUS)


According to our database1, Kang Ning authored at least 53 papers between 2006 and 2024.

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Timeline

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Bibliography

2024
Hidden Links Between Skin Microbiome and Skin Imaging Phenome.
Genom. Proteom. Bioinform., 2024

2023
Artificial intelligence-enabled microbiome-based diagnosis models for a broad spectrum of cancer types.
Briefings Bioinform., May, 2023

Tracing human life trajectory using gut microbial communities by context-aware deep learning.
Briefings Bioinform., January, 2023

ContactLib-ATT: A Structure-Based Search Engine for Homologous Proteins.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

2022
Microbial Dark Matter: from Discovery to Applications.
Genom. Proteom. Bioinform., October, 2022

Ontology-aware neural network: a general framework for pattern mining from microbiome data.
Briefings Bioinform., 2022

EXPERT: transfer learning-enabled context-aware microbial community classification.
Briefings Bioinform., 2022

2021
Reliable and Interpretable Mortality Prediction With Strong Foresight in COVID-19 Patients: An International Study From China and Germany.
Frontiers Artif. Intell., 2021

Meta-Prism: Ultra-fast and highly accurate microbial community structure search utilizing dual indexing and parallel computation.
Briefings Bioinform., 2021

Hydrogen bonds meet self-attention: all you need for protein structure embedding.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020
Classification of the Gut Microbiota of Patients in Intensive Care Units During Development of Sepsis and Septic Shock.
Genom. Proteom. Bioinform., 2020

2019
The Fast Track for Microbiome Research.
Genom. Proteom. Bioinform., 2019

Agricultural Risk Factors Influence Microbial Ecology in Honghu Lake.
Genom. Proteom. Bioinform., 2019

Stereotypes About Enterotype: the Old and New Ideas.
Genom. Proteom. Bioinform., 2019

Meta-network: optimized species-species network analysis for microbial communities.
BMC Genom., 2019

Strain-GeMS: optimized subspecies identification from microbiome data based on accurate variant modeling.
Bioinform., 2019

2016
FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition.
Bioinform., 2016

MultiGeMS: detection of SNVs from multiple samples using model selection on high-throughput sequencing data.
Bioinform., 2016

2015
Condensing Raman spectrum for single-cell phenotype analysis.
BMC Bioinform., December, 2015

Application of Meta-Mesh on the analysis of microbial communities from human associated-habitats.
Quant. Biol., 2015

The Tara Oceans Project: New Opportunities and Greater Challenges Ahead.
Genom. Proteom. Bioinform., 2015

2014
Meta-QC-Chain: Comprehensive and Fast Quality Control Method for Metagenomic Data.
Genom. Proteom. Bioinform., 2014

DNA Extraction Protocol for Biological Ingredient Analysis of Liuwei Dihuang Wan.
Genom. Proteom. Bioinform., 2014

Microbial community pattern detection in human body habitats via ensemble clustering framework.
BMC Syst. Biol., 2014

GPU-Meta-Storms: computing the structure similarities among massive amount of microbial community samples using GPU.
Bioinform., 2014

2013
Systematic assessment of the expected length, variance and distribution of Longest Common Subsequences.
CoRR, 2013

2012
Parallel-META: efficient metagenomic data analysis based on high-performance computation.
BMC Syst. Biol., 2012

SNP calling using genotype model selection on high-throughput sequencing data.
Bioinform., 2012

Meta-Storms: efficient search for similar microbial communities based on a novel indexing scheme and similarity score for metagenomic data.
Bioinform., 2012

A machine learning framework of functional biomarker discovery for different microbial communities based on metagenomic data.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

2011
The multiple sequence sets: problem and heuristic algorithms.
J. Comb. Optim., 2011

Analysis of the relationships among Longest Common Subsequences, Shortest Common Supersequences and patterns and its application on pattern discovery in biological sequences.
Int. J. Data Min. Bioinform., 2011

An Open-source Collaboration Environment for Metagenomics Research.
Proceedings of the IEEE 7th International Conference on E-Science, 2011

2010
Multiple oligo nucleotide arrays: Methods to reduce manufacture time and cost.
CoRR, 2010

Deposition and extension approach to find longest common subsequence for thousands of long sequences.
Comput. Biol. Chem., 2010

MCL-CAw: a refinement of MCL for detecting yeast complexes from weighted PPI networks by incorporating core-attachment structure.
BMC Bioinform., 2010

Examination of the relationship between essential genes in PPI network and hub proteins in reverse nearest neighbor topology.
BMC Bioinform., 2010

The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment.
BMC Bioinform., 2010

2009
The Distribution and Deposition Algorithm for Multiple Sequences Sets
CoRR, 2009

A Pseudo DNA Cryptography Method
CoRR, 2009

A Deposition and Post Processing Approach for the Longest Common Subsequence Problem
CoRR, 2009

2008
On Preprocessing and Antisymmetry in <i>de novo</i> peptide Sequencing: Improving Efficiency and Accuracy.
J. Bioinform. Comput. Biol., 2008

Using Indirect protein-protein Interactions for protein Complex Prediction.
J. Bioinform. Comput. Biol., 2008

Detecting hubs and quasi cliques in scale-free networks.
Proceedings of the 19th International Conference on Pattern Recognition (ICPR 2008), 2008

2007
A New Approach for Similarity Queries of Biological Sequences in Databases.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2007

De Novo Peptide Sequencing for Mass Spectra Based on Multi-Charge Strong Tags.
Proceedings of 5th Asia-Pacific Bioinformatics Conference, 2007

2006
Modeling and Characterization of Multi-charge Mass Spectra for Peptide Sequencing.
J. Bioinform. Comput. Biol., 2006

Towards a better solution to the shortest common supersequence problem: the deposition and reduction algorithm.
BMC Bioinform., 2006

A Database Search Algorithm for Identification of Peptides with Multiple Charges Using Tandem Mass Spectrometry.
Proceedings of the Data Mining for Biomedical Applications, PAKDD 2006 Workshop, 2006

Automated Identification of Protein Classification and Detection of Annotation Errors in Protein Databases Using Statistical Approaches.
Proceedings of the Knowledge Discovery in Life Science Literature, 2006

Towards a Better Solution to the Shortest Common Supersequence Problem: A Post.
Proceedings of the Interdisciplinary and Multidisciplinary Research in Computer Science, 2006

Finding Patterns in Biological Sequences by Longest Common Subsequencesand Shortest Common Supersequences.
Proceedings of the Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 2006

Characterization of Multi-Charge Mass Spectra for Peptide Sequencing.
Proceedings of 4th Asia-Pacific Bioinformatics Conference. 13-16 February 2006, 2006


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