Kamran Karimi

According to our database, Kamran Karimi authored at least 35 papers between 1997 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2022

Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms.

Bradley I. Arshinoff, Gregory A. Cary, Kamran Karimi, Saoirse Foley, Sergei Agalakov, Francisco Delgado, Vaneet S. Lotay, Carolyn Ku, Troy J. Pells, Thomas R. Beatman, Eugene Kim, R. Andrew Cameron, Peter D. Vize, Cheryl A. Telmer, Jenifer C. Croce, Charles A. Ettensohn, Veronica F. Hinman

Nucleic Acids Res., 2022

The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development.

Malcolm E. Fisher, Erik Segerdell, Nicolas Matentzoglu, Mardi J. Nenni, Joshua D. Fortriede, Stanley Chu, Troy J. Pells, David Osumi-Sutherland, Praneet Chaturvedi, Christina James-Zorn, Nivitha Sundararaj, Vaneet S. Lotay, Virgilio Ponferrada, Dong Zhuo Wang, Eugene Kim, Sergei Agalakov, Bradley I. Arshinoff, Kamran Karimi, Peter D. Vize, Aaron M. Zorn

BMC Bioinform., 2022

2021

Classifying domain-specific text documents containing ambiguous keywords.

Kamran Karimi, Sergei Agalakov, Cheryl A. Telmer, Thomas R. Beatman, Troy J. Pells, Bradley I. M. Arshinoff, Carolyn Ku, Saoirse Foley, Veronica F. Hinman, Charles A. Ettensohn, Peter D. Vize

Database J. Biol. Databases Curation, 2021

Integration of 1: 1 orthology maps and updated datasets into Echinobase.

Saoirse Foley, Carolyn Ku, Brad Arshinoff, Vaneet Lotay, Kamran Karimi, Peter D. Vize, Veronica F. Hinman

Database J. Biol. Databases Curation, 2021

2020

Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database.

Joshua D. Fortriede, Troy J. Pells, Stanley Chu, Praneet Chaturvedi, Dong Zhou Wang, Malcolm E. Fisher, Christina James-Zorn, Ying Wang, Mardi J. Nenni, Kevin A. Burns, Vaneet Lotay, Virgilio G. Ponferrada, Kamran Karimi, Aaron M. Zorn, Peter D. Vize

Nucleic Acids Res., 2020

2018

Xenbase: a genomic, epigenomic and transcriptomic model organism database.

Kamran Karimi, Joshua D. Fortriede, Vaneet Lotay, Kevin A. Burns, Dong Zhou Wang, Malcolm E. Fisher, Troy J. Pells, Christina James-Zorn, Ying Wang, Virgilio G. Ponferrada, Stanley Chu, Praneet Chaturvedi, Aaron M. Zorn, Peter D. Vize

Nucleic Acids Res., 2018

Visualization of Gene Expression and Expression as a Phenotype with the XPO, XAO and DO using a Combination of Experimental Data Sources.

Troy J. Pells, Malcolm E. Fisher, Erik Segerdell, Joshua D. Fortriede, Kevin A. Burns, Stanley Chu, Praneet Chaturvedi, Christina James-Zorn, Vaneet Lotay, Mardi J. Nenni, Virgilio G. Ponferrada, Dong Zhou Wang, Ying Wang, Kamran Karimi, Peter D. Vize, Aaron M. Zorn

Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018

2015

Xenbase, the <i>Xenopus</i> model organism database; new virtualized system, data types and genomes.

J. Brad Karpinka, Joshua D. Fortriede, Kevin A. Burns, Christina James-Zorn, Virgilio G. Ponferrada, Jacqueline Lee, Kamran Karimi, Aaron M. Zorn, Peter D. Vize

Nucleic Acids Res., 2015

The Feasibility of Using OpenCL Instead of OpenMP for Parallel CPU Programming.

Kamran Karimi

CoRR, 2015

2014

Accelerating a Cloud-Based Software GNSS Receiver.

Kamran Karimi, Aleks G. Pamir, M. Haris Afzal

Int. J. Grid High Perform. Comput., 2014

The Virtual Xenbase: transitioning an online bioinformatics resource to a private cloud.

Kamran Karimi, Peter D. Vize

Database J. Biol. Databases Curation, 2014

2012

Investigating the performance of an adiabatic quantum optimization processor.

Kamran Karimi, Neil G. Dickson, Firas Hamze, Mohammad H. S. Amin, Marshall Drew-Brook, Fabián A. Chudak, Paul I. Bunyk, William G. Macready, Geordie Rose

Quantum Inf. Process., 2012

Challenges of Upgrading a Virtual Appliance

Kamran Karimi

CoRR, 2012

2011

Importance of explicit vectorization for CPU and GPU software performance.

Neil G. Dickson, Kamran Karimi, Firas Hamze

J. Comput. Phys., 2011

High-performance Physics Simulations Using Multi-core CPUs and GPGPUs in a Volunteer Computing Context.

Kamran Karimi, Neil G. Dickson, Firas Hamze

Int. J. High Perform. Comput. Appl., 2011

2010

A Brief Introduction to Temporality and Causality

Kamran Karimi

CoRR, 2010

A Performance Comparison of CUDA and OpenCL

Kamran Karimi, Neil G. Dickson, Firas Hamze

CoRR, 2010

Generation and Interpretation of Temporal Decision Rules

Kamran Karimi, Howard J. Hamilton

CoRR, 2010

2009

The Multi-Tree Cubing algorithm for computing iceberg cubes.

Xing Li, Howard J. Hamilton, Kamran Karimi, Liqiang Geng

J. Intell. Inf. Syst., 2009

2008

A developed methodology for human driven knowledge acquisition.

Navid Nezafati, Seyed Mohmmad Javad Jalali, Mahdi Shafieezadeh, Kamran Karimi

Proceedings of the ITI 2008 30th International Conference on Information Technology Interfaces, 2008

Risk Assessment Approach to Knowledge Management based on SECI Model.

Mahdi Shafieezadeh, Seyed Mohmmad Javad Jalali, Kamran Karimi, Nafiseh Payani

Proceedings of the 2008 International Conference on Information & Knowledge Engineering, 2008

Using Dependence Diagrams to Summarize Decision Rule Sets.

Kamran Karimi, Howard J. Hamilton

Proceedings of the Advances in Artificial Intelligence , 2008

2006

Transparent Distributed Programming under Linux.

Kamran Karimi, Mohsen Sharifi

Proceedings of the 20th Annual International Symposium on High Performance Computing Systems and Applications (HPCS 2006), 2006

2005

The TIMERS II Algorithm for the Discovery of Causality.

Howard J. Hamilton, Kamran Karimi

Proceedings of the Advances in Knowledge Discovery and Data Mining, 2005

2003

Distinguishing Causal and Acausal Temporal Relations.

Kamran Karimi, Howard J. Hamilton

Proceedings of the Advances in Knowledge Discovery and Data Mining, 2003

Discovering Temporal/Causal Rules: A Comparison of Methods.

Kamran Karimi, Howard J. Hamilton

Proceedings of the Advances in Artificial Intelligence, 2003

Back to the Future: Changing the Direction of Time to Discover Causality.

Kamran Karimi

Proceedings of the Advances in Artificial Intelligence, 2003

2002

Discovering Temporal Rules from Temporally Ordered Data.

Kamran Karimi, Howard J. Hamilton

Proceedings of the Intelligent Data Engineering and Automated Learning, 2002

TimeSleuth: A Tool for Discovering Causal and Temporal Rules.

Kamran Karimi, Howard J. Hamilton

Proceedings of the 14th IEEE International Conference on Tools with Artificial Intelligence (ICTAI 2002), 2002

RFCT: An Association-Based Causality Miner.

Kamran Karimi, Howard J. Hamilton

Proceedings of the Advances in Artificial Intelligence, 2002

2000

A Proposal for Including Behavior in the Process of Object Similarity Assessment with Examples from Artificial Life.

Kamran Karimi, Julia Ann Johnson, Howard J. Hamilton

Proceedings of the Rough Sets and Current Trends in Computing, 2000

Finding Temporal Relations: Causal Bayesian Networks vs. C4.5.

Kamran Karimi, Howard J. Hamilton

Proceedings of the Foundations of Intelligent Systems, 12th International Symposium, 2000

Logical Decision Rules: Teaching C4.5 to Speak Prolog.

Kamran Karimi, Howard J. Hamilton

Proceedings of the Intelligent Data Engineering and Automated Learning, 2000

The Iterative Multi-agent Method for Solving Complex Search Problems.

Kamran Karimi

Proceedings of the Advances in Artificial Intelligence, 2000

1997

DIPC: A System Software Solution for Distributed Programming.

Kamran Karimi, Mohsen Sharifi

Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 1997