Kam Y. J. Zhang

According to our database, Kam Y. J. Zhang authored at least 29 papers between 2010 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

CACHE Challenge #1: Targeting the WDR Domain of LRRK2, A Parkinson's Disease Associated Protein.

Fengling Li, Suzanne Ackloo, Cheryl H. Arrowsmith, Fuqiang Ban, Christopher J. Barden, Hartmut Beck, Jan Beránek, Francois Berenger, Albina Bolotokova, Guillaume Bret, Marko Breznik, Emanuele Carosati, Irene Chau, Yu Chen, Artem Cherkasov, Dennis Della Corte, Katrin Denzinger, Aiping Dong, Sorin Draga, Ian Dunn, Kristina Edfeldt, Aled M. Edwards, Merveille K. I. Eguida, Paul Eisenhuth, Lukas Friedrich, Alexander Fuerll, Spencer S. Gardiner, Francesco Gentile, Pegah Ghiabi, Elisa Gibson, Marta Glavatskikh, Christoph Gorgulla, Judith Guenther, Anders Gunnarsson, Filipp Gusev, Evgeny Gutkin, Levon Halabelian, Rachel J. Harding, Alexander Hillisch, Laurent Hoffer, Anders Hogner, Scott Houliston, John J. Irwin, Olexandr Isayev, Aleksandra Ivanova, Célien Jacquemard, Austin J. Jarrett, Jan H. Jensen, Dmitri Kireev, Julian Kleber, S. Benjamin Koby, David Koes, Ashutosh Kumar, Maria G. Kurnikova, Alina Kutlushina, Uta F. Lessel, Fabian Liessmann, Sijie Liu, Wei Lu, Jens Meiler, Akhila Mettu, Guzel Minibaeva, Rocco Moretti, Connor J. Morris, Chamali Narangoda, Theresa Noonan, Leon Obendorf, Szymon Pach, Amit Pandit, Sumera Perveen, Gennady Poda, Pavel G. Polishchuk, Kristina Puls, Vera Pütter, Didier Rognan, Dylan Roskams-Edris, Christina E. M. Schindler, François Sindt, Vojtech Spiwok, Casper Steinmann, Rick L. Stevens, Valerij Talagayev, Damon Tingey, Oanh Vu, W. Patrick Walters, Xiaowen Wang, Zhenyu Wang, Gerhard Wolber, Clemens Alexander Wolf, Lars Wortmann, Hong Zeng, Carlos A. Zepeda, Kam Y. J. Zhang, Jixian Zhang, Shuangjia Zheng, Matthieu Schapira

J. Chem. Inf. Model., 2024

2022

ProFitFun: a protein tertiary structure fitness function for quantifying the accuracies of model structures.

Rahul Kaushik, Kam Y. J. Zhang

Bioinform., 2022

2021

Lean-Docking: Exploiting Ligands' Predicted Docking Scores to Accelerate Molecular Docking.

Francois Berenger, Ashutosh Kumar, Kam Y. J. Zhang, Yoshihiro Yamanishi

J. Chem. Inf. Model., 2021

An integrated computational pipeline for designing high-affinity nanobodies with expanded genetic codes.

Aditya K. Padhi, Ashutosh Kumar, Ken-ichi Haruna, Haruna Sato, Hiroko Tamura, Satoru Nagatoishi, Kouhei Tsumoto, Atushi Yamaguchi, Fumie Iraha, Mihoko Takahashi, Kensaku Sakamoto, Kam Y. J. Zhang

Briefings Bioinform., 2021

Evolutionary and codon usage preference insights into spike glycoprotein of SARS-CoV-2.

Yashpal Singh Malik, Mohd Ikram Ansari, Jobin Jose Kattoor, Rahul Kaushik, Shubhankar Sircar, Anbazhagan Subbaiyan, Ruchi Tiwari, Kuldeep Dhama, Souvik Ghosh, Shailly Tomar, Kam Y. J. Zhang

Briefings Bioinform., 2021

Insights into the evolutionary forces that shape the codon usage in the viral genome segments encoding intrinsically disordered protein regions.

Naveen Kumar, Rahul Kaushik, Chandana Tennakoon, Vladimir N. Uversky, Sonia Longhi, Kam Y. J. Zhang, Sandeep Bhatia

Briefings Bioinform., 2021

2019

Population-Based Sampling and Fragment-Based De Novo Protein Structure Prediction.

David Simoncini, Kam Y. J. Zhang

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Chemoinformatics and structural bioinformatics in OCaml.

Francois Berenger, Kam Y. J. Zhang, Yoshihiro Yamanishi

J. Cheminformatics, 2019

Improving ligand 3D shape similarity-based pose prediction with a continuum solvent model.

Ashutosh Kumar, Kam Y. J. Zhang

J. Comput. Aided Mol. Des., 2019

Shape similarity guided pose prediction: lessons from D3R Grand Challenge 3.

Ashutosh Kumar, Kam Y. J. Zhang

J. Comput. Aided Mol. Des., 2019

A structural homology approach for computational protein design with flexible backbone.

David Simoncini, Kam Y. J. Zhang, Thomas Schiex, Sophie Barbe

Bioinform., 2019

2018

A cross docking pipeline for improving pose prediction and virtual screening performance.

Ashutosh Kumar, Kam Y. J. Zhang

J. Comput. Aided Mol. Des., 2018

2017

Discovery of Fungal Denitrification Inhibitors by Targeting Copper Nitrite Reductase from <i>Fusarium oxysporum</i>.

Masaki Matsuoka, Ashutosh Kumar, Muhammad Muddassar, Akihisa Matsuyama, Minoru Yoshida, Kam Y. J. Zhang

J. Chem. Inf. Model., 2017

Fragger: a protein fragment picker for structural queries.

Francois Berenger, David Simoncini, Arnout R. D. Voet, Rojan Shrestha, Kam Y. J. Zhang

F1000Research, 2017

2016

A Novel Scaffold for Developing Specific or Broad-Spectrum Chitinase Inhibitors.

Xi Jiang, Ashutosh Kumar, Tian Liu, Kam Y. J. Zhang, Qing Yang

J. Chem. Inf. Model., 2016

Application of Shape Similarity in Pose Selection and Virtual Screening in CSARdock2014 Exercise.

Ashutosh Kumar, Kam Y. J. Zhang

J. Chem. Inf. Model., 2016

Prospective evaluation of shape similarity based pose prediction method in D3R Grand Challenge 2015.

Ashutosh Kumar, Kam Y. J. Zhang

J. Comput. Aided Mol. Des., 2016

A pose prediction approach based on ligand 3D shape similarity.

Ashutosh Kumar, Kam Y. J. Zhang

J. Comput. Aided Mol. Des., 2016

2014

Identification of 1, 2, 5-Oxadiazoles as a New Class of SENP2 Inhibitors Using Structure Based Virtual Screening.

Ashutosh Kumar, Akihiro Ito, Misao Takemoto, Minoru Yoshida, Kam Y. J. Zhang

J. Chem. Inf. Model., 2014

Identification of Sumoylation Inhibitors Targeting a Predicted Pocket in Ubc9.

Ashutosh Kumar, Akihiro Ito, Mikako Hirohama, Minoru Yoshida, Kam Y. J. Zhang

J. Chem. Inf. Model., 2014

Identification of SUMO activating enzyme 1 inhibitors utilizing virtual screening approach.

Ashutosh Kumar, Akihiro Ito, Mikako Hirohama, Minoru Yoshida, Kam Y. J. Zhang

J. Cheminformatics, 2014

A rotation-translation invariant molecular descriptor of partial charges and its use in ligand-based virtual screening.

Francois Berenger, Arnout R. D. Voet, Xiao Yin Lee, Kam Y. J. Zhang

J. Cheminformatics, 2014

Combining in silico and in cerebro approaches for virtual screening and pose prediction in SAMPL4.

Arnout R. D. Voet, Ashutosh Kumar, Francois Berenger, Kam Y. J. Zhang

J. Comput. Aided Mol. Des., 2014

2013

Investigation on the Effect of Key Water Molecules on Docking Performance in CSARdock Exercise.

Ashutosh Kumar, Kam Y. J. Zhang

J. Chem. Inf. Model., 2013

Identification of Sumoylation Activating Enzyme 1 Inhibitors by Structure-Based Virtual Screening.

Ashutosh Kumar, Akihiro Ito, Mikako Hirohama, Minoru Yoshida, Kam Y. J. Zhang

J. Chem. Inf. Model., 2013

2012

Durandal: Fast exact clustering of protein decoys.

Francois Berenger, Rojan Shrestha, Yong Zhou, David Simoncini, Kam Y. J. Zhang

J. Comput. Chem., 2012

Computational fragment-based screening using RosettaLigand: the SAMPL3 challenge.

Ashutosh Kumar, Kam Y. J. Zhang

J. Comput. Aided Mol. Des., 2012

2011

Entropy-accelerated exact clustering of protein decoys.

Francois Berenger, Yong Zhou, Rojan Shrestha, Kam Y. J. Zhang

Bioinform., 2011

2010

PAR: a PARallel and distributed job crusher.

Francois Berenger, Camille Coti, Kam Y. J. Zhang

Bioinform., 2010