Kalle Karhu

According to our database, Kalle Karhu authored at least 10 papers between 2010 and 2017.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2017

A Graph-Theoretical Approach for Motif Discovery in Protein Sequences.

Elena Czeizler, Tommi Hirvola, Kalle Karhu

IEEE ACM Trans. Comput. Biol. Bioinform., 2017

Document retrieval on repetitive string collections.

Travis Gagie, Aleksi Hartikainen, Kalle Karhu, Juha Kärkkäinen, Gonzalo Navarro, Simon J. Puglisi, Jouni Sirén

Inf. Retr. J., 2017

The impact of manual threshold selection in medical additive manufacturing.

Maureen van Eijnatten, Juha Koivisto, Kalle Karhu, Tymour Forouzanfar, Jan Wolff

Int. J. Comput. Assist. Radiol. Surg., 2017

2014

Multi-pattern matching with bidirectional indexes.

Simon Gog, Kalle Karhu, Juha Kärkkäinen, Veli Mäkinen, Niko Välimäki

J. Discrete Algorithms, 2014

2013

String Searching Methods for Bioinformatics ; Merkkijonohaun Menetelmät Bioinformatiikassa.

Kalle Karhu

PhD thesis, 2013

Document Listing on Repetitive Collections.

Travis Gagie, Kalle Karhu, Gonzalo Navarro, Simon J. Puglisi, Jouni Sirén

Proceedings of the Combinatorial Pattern Matching, 24th Annual Symposium, 2013

2012

Indexed Multi-pattern Matching.

Travis Gagie, Kalle Karhu, Juha Kärkkäinen, Veli Mäkinen, Leena Salmela, Jorma Tarhio

Proceedings of the LATIN 2012: Theoretical Informatics, 2012

2011

Improving Exact Search of Multiple Patterns From a Compressed Suffix Array.

Kalle Karhu

Proceedings of the Prague Stringology Conference 2011, 2011

GAST, a Genomic Alignment Search Tool.

Kalle Karhu, Juho Mäkinen, Jussi Rautio, Jorma Tarhio, Hugh Salamon

Proceedings of the BIOINFORMATICS 2011, 2011

2010

Pattern Kits

Travis Gagie, Kalle Karhu, Juha Kärkkäinen, Veli Mäkinen, Leena Salmela

CoRR, 2010