Justin Chu

According to our database, Justin Chu authored at least 18 papers between 2014 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

btllib: A C++ library with Python interface for efficient genomic sequence processing.

Vladimir Nikolic, Parham Kazemi, Lauren Coombe, Johnathan Wong, Amirhossein Afshinfard, Justin Chu, René L. Warren, Inanç Birol

J. Open Source Softw., November, 2022

Effective fault localization and context-aware debugging for concurrent programs.

Justin Chu, Tingting Yu, Jane Huffman Hayes, Xue Han, Yu Zhao

Softw. Test. Verification Reliab., 2022

RResolver: efficient short-read repeat resolution within ABySS.

Vladimir Nikolic, Amirhossein Afshinfard, Justin Chu, Johnathan Wong, Lauren Coombe, Ka Ming Nip, René L. Warren, Inanç Birol

BMC Bioinform., 2022

2021

GapPredict - A Language Model for Resolving Gaps in Draft Genome Assemblies.

Eric Chen, Justin Chu, Jessica Zhang, René L. Warren, Inanç Birol

IEEE ACM Trans. Comput. Biol. Bioinform., 2021

90% Accuracy for Photoplethysmography-Based Non-Invasive Blood Glucose Prediction by Deep Learning with Cohort Arrangement and Quarterly Measured HbA1c.

Justin Chu, Wen-Tse Yang, Wei-Ru Lu, Yao-Ting Chang, Tung-Han Hsieh, Fu-Liang Yang

Sensors, 2021

2020

Mismatch-tolerant, alignment-free sequence classification using multiple spaced seeds and multiindex Bloom filters.

Justin Chu, Hamid Mohamadi, Emre Erhan, Jeffery Tse, Readman Chiu, Sarah Yeo, Inanç Birol

Proc. Natl. Acad. Sci. USA, 2020

ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs.

Lauren Coombe, Vladimir Nikolic, Justin Chu, Inanç Birol, René L. Warren

Bioinform., 2020

2018

Tigmint: correcting assembly errors using linked reads from large molecules.

Shaun D. Jackman, Lauren Coombe, Justin Chu, René L. Warren, Benjamin P. Vandervalk, Sarah Yeo, Zhuyi Xue, Hamid Mohamadi, Jörg Bohlmann, Steven J. M. Jones, Inanç Birol

BMC Bioinform., 2018

ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers.

Lauren Coombe, Jessica Zhang, Benjamin P. Vandervalk, Justin Chu, Shaun D. Jackman, Inanç Birol, René L. Warren

BMC Bioinform., 2018

ARCS: scaffolding genome drafts with linked reads.

Sarah Yeo, Lauren Coombe, René L. Warren, Justin Chu, Inanç Birol

Bioinform., 2018

ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data.

Hamza Khan, Hamid Mohamadi, Benjamin P. Vandervalk, René L. Warren, Justin Chu, Inanç Birol

Bioinform., 2018

ntPack: A Software Package for Big Data in Genomics.

Inanç Birol, Hamid Mohamadi, Justin Chu

Proceedings of the 5th IEEE/ACM International Conference on Big Data Computing Applications and Technologies, 2018

2017

Kollector: transcript-informed, targeted de novo assembly of gene loci.

Erdi Kucuk, Justin Chu, Benjamin P. Vandervalk, S. Austin Hammond, René L. Warren, Inanç Birol

Bioinform., 2017

Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art.

Justin Chu, Hamid Mohamadi, René L. Warren, Chen Yang, Inanç Birol

Bioinform., 2017

2016

ntHash: recursive nucleotide hashing.

Hamid Mohamadi, Justin Chu, Benjamin P. Vandervalk, Inanç Birol

Bioinform., 2016

2014

BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters.

Justin Chu, Sara Sadeghi, Anthony Raymond, Shaun D. Jackman, Ka Ming Nip, Richard Mar, Hamid Mohamadi, Yaron S. N. Butterfield, A. Gordon Robertson, Inanç Birol

Bioinform., 2014

Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph.

Benjamin P. Vandervalk, Shaun D. Jackman, Anthony Raymond, Hamid Mohamadi, Chen Yang, Dean A. Attali, Justin Chu, René L. Warren, Inanç Birol

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Spaced seed data structures.

Inanç Birol, Hamid Mohamadi, Anthony Raymond, Karthika Raghavan, Justin Chu, Benjamin P. Vandervalk, Shaun D. Jackman, René L. Warren

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014