Justin A. Lemkul

Orcid: 0000-0001-6661-8653

According to our database1, Justin A. Lemkul authored at least 12 papers between 2009 and 2023.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Online presence:

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Bibliography

2023
Differences in Conformational Sampling and Intrinsic Electric Fields Drive Ion Binding in Telomeric and TERRA G-Quadruplexes.
J. Chem. Inf. Model., November, 2023

charmm2gmx: An Automated Method to Port the CHARMM Additive Force Field to GROMACS.
J. Chem. Inf. Model., July, 2023

2022
TUPÃ: Electric field analyses for molecular simulations.
J. Comput. Chem., 2022

CHARMM-GUI Drude prepper for molecular dynamics simulation using the classical Drude polarizable force field.
J. Comput. Chem., 2022

2020
Ion Binding Properties and Dynamics of the bcl-2 G-Quadruplex Using a Polarizable Force Field.
J. Chem. Inf. Model., 2020

2019
Integrating Scientific Programming in Communities of Practice for Students in the Life Sciences.
Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning), 2019

2018
Polarizable force field for RNA based on the classical drude oscillator.
J. Comput. Chem., 2018

Molecular dynamics simulations using the drude polarizable force field on GPUs with OpenMM: Implementation, validation, and benchmarks.
J. Comput. Chem., 2018

2016
DIRECT-ID: An automated method to identify and quantify conformational variations - application to β<sub>2</sub>-adrenergic GPCR.
J. Comput. Chem., 2016

2015
Implementation of extended Lagrangian dynamics in GROMACS for polarizable simulations using the classical Drude oscillator model.
J. Comput. Chem., 2015

2010
Practical Considerations for Building GROMOS-Compatible Small-Molecule Topologies.
J. Chem. Inf. Model., 2010

2009
GridMAT-MD: A grid-based membrane analysis tool for use with molecular dynamics.
J. Comput. Chem., 2009


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