Jürgen Zanghellini

According to our database, Jürgen Zanghellini authored at least 20 papers between 2012 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Flexible Nets to Improve GEM Cell Factories by Combining Kinetic and Proteomics Data.

Jorge Lázaro, Jorge Júlvez, Jürgen Zanghellini

Proceedings of the Computational Methods in Systems Biology, 2024

2023

<tt>ecmtool</tt>: fast and memory-efficient enumeration of elementary conversion modes.

Bianca A. Buchner, Tom J. Clement, Daan H. de Groot, Jürgen Zanghellini

Bioinform., March, 2023

2022

Homologue series detection and management in LC-MS data with <i>homologueDiscoverer</i>.

Kevin Mildau, Justin J. J. van der Hooft, Mira Flasch, Benedikt Warth, Yasin El Abiead, Gunda Koellensperger, Jürgen Zanghellini, Christoph Bueschl

Bioinform., November, 2022

Elementary vectors and autocatalytic sets for resource allocation in next-generation models of cellular growth.

Stefan Müller, Diana Széliová, Jürgen Zanghellini

PLoS Comput. Biol., 2022

Probabilistic quotient's work and pharmacokinetics' contribution: countering size effect in metabolic time series measurements.

Mathias Gotsmy, Julia Brunmair, Christoph Bueschl, Christopher Gerner, Jürgen Zanghellini

BMC Bioinform., 2022

PeakBot: machine-learning-based chromatographic peak picking.

Christoph Bueschl, Maria Doppler, Elisabeth Varga, Bernhard Seidl, Mira Flasch, Benedikt Warth, Jürgen Zanghellini

Bioinform., 2022

2021

Inclusion of maintenance energy improves the intracellular flux predictions of CHO.

Diana Széliová, Jerneja Stor, Isabella Thiel, Marcus Weinguny, Michael Hanscho, Gabriele Lhota, Nicole Borth, Jürgen Zanghellini, David E. Ruckerbauer, Isabel Rocha

PLoS Comput. Biol., 2021

EFMlrs: a Python package for elementary flux mode enumeration via lexicographic reverse search.

Bianca A. Buchner, Jürgen Zanghellini

BMC Bioinform., 2021

2019

Flux tope analysis: studying the coordination of reaction directions in metabolic networks.

Matthias P. Gerstl, Stefan Müller, Georg Regensburger, Jürgen Zanghellini

Bioinform., 2019

2017

From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints.

Steffen Klamt, Georg Regensburger, Matthias P. Gerstl, Christian Jungreuthmayer, Stefan Schuster, Radhakrishnan Mahadevan, Jürgen Zanghellini, Stefan Müller

PLoS Comput. Biol., 2017

Optimal knockout strategies in genome-scale metabolic networks using particle swarm optimization.

Govind Nair, Christian Jungreuthmayer, Jürgen Zanghellini

BMC Bioinform., 2017

CHOmine: an integrated data warehouse for CHO systems biology and modeling.

Matthias P. Gerstl, Michael Hanscho, David E. Ruckerbauer, Jürgen Zanghellini, Nicole Borth

Database J. Biol. Databases Curation, 2017

2016

<i>ICT</i>: isotope correction toolbox.

Christian Jungreuthmayer, Stefan Neubauer, Teresa Mairinger, Jürgen Zanghellini, Stephan Hann

Bioinform., 2016

Exact quantification of cellular robustness in genome-scale metabolic networks.

Matthias P. Gerstl, Steffen Klamt, Christian Jungreuthmayer, Jürgen Zanghellini

Bioinform., 2016

2015

tEFMA: computing thermodynamically feasible elementary flux modes in metabolic networks.

Matthias P. Gerstl, Christian Jungreuthmayer, Jürgen Zanghellini

Bioinform., 2015

Designing minimal microbial strains of desired functionality using a genetic algorithm.

Govind Nair, Christian Jungreuthmayer, Michael Hanscho, Jürgen Zanghellini

Algorithms Mol. Biol., 2015

2013

Comparison and improvement of algorithms for computing minimal cut sets.

Christian Jungreuthmayer, Govind Nair, Steffen Klamt, Jürgen Zanghellini

BMC Bioinform., 2013

regEfmtool: Speeding up elementary flux mode calculation using transcriptional regulatory rules in the form of three-state logic.

Christian Jungreuthmayer, David E. Ruckerbauer, Jürgen Zanghellini

Biosyst., 2013

Designing an optimally ethanol producing E. coli strain using constrained minimal cut sets.

Christian Jungreuthmayer, Margot Sonnleitner, Gerald Striedner, Jürgen Mairhofer, Jürgen Zanghellini

Proceedings of the 21st European Signal Processing Conference, 2013

2012

Designing optimal cell factories: integer programming couples elementary mode analysis with regulation.

Christian Jungreuthmayer, Jürgen Zanghellini

BMC Syst. Biol., 2012