Junqi Yin

Orcid: 0000-0003-3843-5520

According to our database1, Junqi Yin authored at least 58 papers between 2012 and 2025.

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Bibliography

2025
chatHPC: Empowering HPC users with large language models.
J. Supercomput., January, 2025

2024
Editorial: Big scientific data analytics on HPC and cloud.
Frontiers Big Data, 2024

A Scalable Real-Time Data Assimilation Framework for Predicting Turbulent Atmosphere Dynamics.
CoRR, 2024

Scalable Artificial Intelligence for Science: Perspectives, Methods and Exemplars.
CoRR, 2024

Sequence Length Scaling in Vision Transformers for Scientific Images on Frontier.
CoRR, 2024

ORBIT: Oak Ridge Base Foundation Model for Earth System Predictability.
CoRR, 2024

Optimizing Distributed Training on Frontier for Large Language Models.
Proceedings of the ISC High Performance 2024 Research Paper Proceedings (39th International Conference), 2024

Comparative Study of Large Language Model Architectures on Frontier.
Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2024

Pretraining Billion-Scale Geospatial Foundational Models on Frontier.
Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2024

The Case for Co-Designing Model Architectures with Hardware.
Proceedings of the 53rd International Conference on Parallel Processing, 2024

2023
Evaluation of pre-training large language models on leadership-class supercomputers.
J. Supercomput., December, 2023

Stable parallel training of Wasserstein conditional generative adversarial neural networks.
J. Supercomput., 2023

Optimizing Distributed Training on Frontier for Large Language Models.
CoRR, 2023

DeepSpeed4Science Initiative: Enabling Large-Scale Scientific Discovery through Sophisticated AI System Technologies.
CoRR, 2023

FORGE: Pre-Training Open Foundation Models for Science.
Proceedings of the International Conference for High Performance Computing, 2023

DeepThermo: Deep Learning Accelerated Parallel Monte Carlo Sampling for Thermodynamics Evaluation of High Entropy Alloys.
Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2023

Distributing Simplex-Shaped Nested for-Loops to Identify Carcinogenic Gene Combinations.
Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2023

2022
Atomic structure generation from reconstructing structural fingerprints.
Mach. Learn. Sci. Technol., December, 2022

Intelligent resolution: Integrating Cryo-EM with AI-driven multi-resolution simulations to observe the severe acute respiratory syndrome coronavirus-2 replication-transcription machinery in action.
Int. J. High Perform. Comput. Appl., 2022

Language models for the prediction of SARS-CoV-2 inhibitors.
Int. J. High Perform. Comput. Appl., 2022

AI Benchmarking for Science: Efforts from the MLCommons Science Working Group.
Proceedings of the High Performance Computing. ISC High Performance 2022 International Workshops - Hamburg, Germany, May 29, 2022

Toward an Autonomous Workflow for Single Crystal Neutron Diffraction.
Proceedings of the Accelerating Science and Engineering Discoveries Through Integrated Research Infrastructure for Experiment, Big Data, Modeling and Simulation, 2022

Machine Learning for First Principles Calculations of Material Properties for Ferromagnetic Materials.
Proceedings of the Accelerating Science and Engineering Discoveries Through Integrated Research Infrastructure for Experiment, Big Data, Modeling and Simulation, 2022

Accelerating Collective Communication in Data Parallel Training across Deep Learning Frameworks.
Proceedings of the 19th USENIX Symposium on Networked Systems Design and Implementation, 2022

Strategies for Integrating Deep Learning Surrogate Models with HPC Simulation Applications.
Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2022

Learning to Scale the Summit: AI for Science on a Leadership Supercomputer.
Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2022

2021
Scalable balanced training of conditional generative adversarial neural networks on image data.
J. Supercomput., 2021

A scalable algorithm for the optimization of neural network architectures.
Parallel Comput., 2021

Neural network-based order parameter for phase transitions and its applications in high-entropy alloys.
Nat. Comput. Sci., 2021

Dynamic Profiling of β-Coronavirus 3CL Mpro Protease Ligand-Binding Sites.
J. Chem. Inf. Model., 2021

Stable Anderson Acceleration for Deep Learning.
CoRR, 2021

MLPerf HPC: A Holistic Benchmark Suite for Scientific Machine Learning on HPC Systems.
CoRR, 2021

Mitigating Catastrophic Forgetting in Deep Learning in a Streaming Setting Using Historical Summary.
Proceedings of the 2021 7th International Workshop on Data Analysis and Reduction for Big Scientific Data, 2021


Production Deployment of Machine-Learned Rotorcraft Surrogate Models on HPC.
Proceedings of the IEEE/ACM Workshop on Machine Learning in High Performance Computing Environments, 2021


Stable Parallel Training of Wasserstein Conditional Generative Adversarial Neural Networks : *Full/Regular Research Paper submission for the symposium CSCI-ISAI: Artificial Intelligence.
Proceedings of the International Conference on Computational Science and Computational Intelligence, 2021

2020
Deep learning of interface structures from simulated 4D STEM data: cation intermixing vs. roughening.
Mach. Learn. Sci. Technol., 2020

Supercomputer-Based Ensemble Docking Drug Discovery Pipeline with Application to Covid-19.
J. Chem. Inf. Model., 2020

Data optimization for large batch distributed training of deep neural networks.
CoRR, 2020

Distributed Training and Optimization Of Neural Networks.
CoRR, 2020

Smoky Mountain Data Challenge 2020: An Open Call to Solve Data Problems in the Areas of Neutron Science, Material Science, Urban Modeling and Dynamics, Geophysics, and Biomedical Informatics.
Proceedings of the Driving Scientific and Engineering Discoveries Through the Convergence of HPC, Big Data and AI, 2020

Toward Real-Time Analysis of Synchrotron Micro-Tomography Data: Accelerating Experimental Workflows with AI and HPC.
Proceedings of the Driving Scientific and Engineering Discoveries Through the Convergence of HPC, Big Data and AI, 2020

Performance Evaluation of Python Based Data Analytics Frameworks in Summit: Early Experiences.
Proceedings of the Driving Scientific and Engineering Discoveries Through the Convergence of HPC, Big Data and AI, 2020

Integrating Deep Learning in Domain Sciences at Exascale.
Proceedings of the Driving Scientific and Engineering Discoveries Through the Convergence of HPC, Big Data and AI, 2020

2019
Exascale Deep Learning for Scientific Inverse Problems.
CoRR, 2019

A greedy constructive algorithm for the optimization of neural network architectures.
CoRR, 2019

Strategies to Deploy and Scale Deep Learning on the Summit Supercomputer.
Proceedings of the Third IEEE/ACM Workshop on Deep Learning on Supercomputers, 2019

2018
Defining Big Data Analytics Benchmarks for Next Generation Supercomputers.
CoRR, 2018


2017
Autumn NDVI contributes more and more to vegetation improvement in the growing season across the Tibetan Plateau.
Int. J. Digit. Earth, 2017

2016
Optimization of non-linear image registration in AFNI.
Proceedings of the XSEDE16 Conference on Diversity, 2016

2015
Analysis on spatio-temporal trends and drivers in vegetation growth during recent decades in Xinjiang, China.
Int. J. Appl. Earth Obs. Geoinformation, 2015

Performance assessment of real-time estimation of continuous-time stochastic volatility of financial data on GPUs.
Proceedings of the 2015 XSEDE Conference: Scientific Advancements Enabled by Enhanced Cyberinfrastructure, St. Louis, MO, USA, July 26, 2015

Integrating apache spark into PBS-Based HPC environments.
Proceedings of the 2015 XSEDE Conference: Scientific Advancements Enabled by Enhanced Cyberinfrastructure, St. Louis, MO, USA, July 26, 2015

fMRI image registration with AFNI's 3dQwarp.
Proceedings of the 6th ACM Conference on Bioinformatics, 2015

2014
Instrumenting Genomic Sequence Analysis Pipeline Mothur on Shared Memory Architecture.
Proceedings of the Annual Conference of the Extreme Science and Engineering Discovery Environment, 2014

2012
Massively parallel Wang-Landau sampling on multiple GPUs.
Comput. Phys. Commun., 2012


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