Junichi Higo

Orcid: 0000-0002-0408-1907

According to our database1, Junichi Higo authored at least 21 papers between 1994 and 2021.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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Bibliography

2021
Flexibility and Cell Permeability of Cyclic Ras-Inhibitor Peptides Revealed by the Coupled Nosé-Hoover Equation.
J. Chem. Inf. Model., 2021

Generalized-ensemble method study: A helix-mimetic compound inhibits protein-protein interaction by long-range and short-range intermolecular interactions.
J. Comput. Chem., 2021

2020
Molecular Interaction Mechanism of a 14-3-3 Protein with a Phosphorylated Peptide Elucidated by Enhanced Conformational Sampling.
J. Chem. Inf. Model., 2020

2019
Multidimensional virtual-system coupled canonical molecular dynamics to compute free-energy landscapes of peptide multimer assembly.
J. Comput. Chem., 2019

2018
Molecular dynamics coupled with a virtual system for effective conformational sampling.
J. Comput. Chem., 2018

2016
Variation of free-energy landscape of the p53 C-terminal domain induced by acetylation: Enhanced conformational sampling.
J. Comput. Chem., 2016

2015
Computational Study of Drug Binding Affinity to Influenza A Neuraminidase Using Smooth Reaction Path Generation (SRPG) Method.
J. Chem. Inf. Model., 2015

Virtual-system-coupled adaptive umbrella sampling to compute free-energy landscape for flexible molecular docking.
J. Comput. Chem., 2015

2011
Theory for trivial trajectory parallelization of multicanonical molecular dynamics and application to a polypeptide in water.
J. Comput. Chem., 2011

2005
Sampling of Protein Conformations with Computers to Predict the Native Structure.
Proceedings of the High-Performance Computing - 6th International Symposium, 2005

2004
On the model granularity to simulate protein dynamics: A biological physics view on biomolecular computing.
Nat. Comput., 2004

2003
beta-Hairpins, alpha-helices, and the intermediates among the secondary structures in the energy landscape of a peptide from a distal beta-hairpin of SH3 domain.
J. Comput. Chem., 2003

Molecular dynamics simulation using coarse-grained model to study protein function and beyond.
Proceedings of the IEEE Congress on Evolutionary Computation, 2003

2002
Calibration of force-field dependency in free energy landscapes of peptide conformations by quantum chemical calculations.
J. Comput. Chem., 2002

Hydration structure of human lysozyme investigated by molecular dynamics simulation and cryogenic X-ray crystal structure analyses: On the correlation between crystal water sites, solvent density, and solvent dipole.
J. Comput. Chem., 2002

2001
Repeated-annealing sampling combined with multicanonical algorithm for conformational sampling of bio-molecules.
J. Comput. Chem., 2001

Collective motions of myosin head derived from backbone molecular dynamics and combination with X-ray solution scattering data.
J. Comput. Chem., 2001

2000
Peptide free-energy profile is strongly dependent on the force field: Comparison of C96 and AMBER95.
J. Comput. Chem., 2000

1996
New implementation of and the modeling by the extended simulated annealing process to structures of T4 lysozyme mutants at the 86th residue.
J. Comput. Chem., 1996

1994
Stability of Two-Dimensional Crystalline Aggregates of a PRotein Studied by Molecular Dynamics.
J. Comput. Chem., 1994

Application of a High-Performance, Special-Purpose Computer, GRAPE-2A, to Molecular Dynamics.
J. Comput. Chem., 1994


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