Junbo Duan

Orcid: 0000-0001-7170-3772

According to our database¹, Junbo Duan authored at least 36 papers between 2011 and 2024.

Collaborative distances:

Dijkstra number² of four.
Erdős number³ of four.

Timeline

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PhD thesis

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Bibliography

2024

On the core segmentation algorithms of copy number variation detection tools.

[BibT_eX]

[DOI]

Yibo Zhang

Wenyu Liu

Junbo Duan

Briefings Bioinform., January, 2024

LoRA-TV: read depth profile-based clustering of tumor cells in single-cell sequencing.

[BibT_eX]

[DOI]

Junbo Duan

Xinrui Zhao

Xiaoming Wu

Briefings Bioinform., 2024

2023

Comparative study of non-convex penalties and related algorithms in compressed sensing.

[BibT_eX]

[DOI]

Fanding Xu

Junbo Duan

Wenyu Liu

Digit. Signal Process., April, 2023

2022

Impact of BRDF Spatiotemporal Smoothing on Land Surface Albedo Estimation.

[BibT_eX]

[DOI]

Remote. Sens., 2022

2021

CNV_IFTV: An Isolation Forest and Total Variation-Based Detection of CNVs from Short-Read Sequencing Data.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2021

ERINS: Novel Sequence Insertion Detection by Constructing an Extended Reference.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Smoothing of Time-Varying Graph With the Generalized LASSO.

[BibT_eX]

[DOI]

IEEE Access, 2021

HOPS: A Fast Algorithm for Segmenting Piecewise Polynomials of Arbitrary Orders.

[BibT_eX]

[DOI]

Junbo Duan

Qing Wang

Yu-Ping Wang

IEEE Access, 2021

2020

SVSR: A Program to Simulate Structural Variations and Generate Sequencing Reads for Multiple Platforms.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2020

CONDEL: Detecting Copy Number Variation and Genotyping Deletion Zygosity from Single Tumor Samples Using Sequence Data.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2020

Comparative study of whole exome sequencing-based copy number variation detection tools.

[BibT_eX]

[DOI]

BMC Bioinform., 2020

CRSCNV: A Cross-Model-Based Statistical Approach to Detect Copy Number Variations in Sequence Data.

[BibT_eX]

[DOI]

IEEE Access, 2020

2019

A Joint Least Squares and Least Absolute Deviation Model.

[BibT_eX]

[DOI]

IEEE Signal Process. Lett., 2019

A Parallelizable Framework for Segmenting Piecewise Signals.

[BibT_eX]

[DOI]

IEEE Access, 2019

2016

A Sparse Model Based Detection of Copy Number Variations From Exome Sequencing Data.

[BibT_eX]

[DOI]

IEEE Trans. Biomed. Eng., 2016

Generalized LASSO with under-determined regularization matrices.

[BibT_eX]

[DOI]

Signal Process., 2016

2015

Homotopy Based Algorithms for ℓ0-Regularized Least-Squares.

[BibT_eX]

[DOI]

IEEE Trans. Signal Process., 2015

An optimal method to segment piecewise poisson distributed signals with application to sequencing data.

[BibT_eX]

[DOI]

Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2015

2014

Common Copy Number Variation Detection From Multiple Sequenced Samples.

[BibT_eX]

[DOI]

Junbo Duan

Hong-Wen Deng

Yu-Ping Wang

IEEE Trans. Biomed. Eng., 2014

Sparse representation based biomarker selection for schizophrenia with integrated analysis of fMRI and SNPs.

[BibT_eX]

[DOI]

NeuroImage, 2014

Population clustering based on copy number variations detected from next generation sequencing data.

[BibT_eX]

[DOI]

J. Bioinform. Comput. Biol., 2014

ℓ2-ℓ0 regularization path tracking algorithms.

[BibT_eX]

[DOI]

CoRR, 2014

2013

Subtyping glioblastoma by combining miRNA and mRNA expression data using compressed sensing-based approach.

[BibT_eX]

[DOI]

EURASIP J. Bioinform. Syst. Biol., 2013

CNV-TV: A robust method to discover copy number variation from short sequencing reads.

[BibT_eX]

[DOI]

BMC Bioinform., 2013

Sparse representation based biomarker selection for schizophrenia with integrated analysis of fMRI and SNP data.

[BibT_eX]

[DOI]

Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Modeling exome sequencing data with generalized Gaussian distribution with application to copy number variation detection.

[BibT_eX]

[DOI]

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012

On LARS/Homotopy Equivalence Conditions for Over-Determined LASSO.

[BibT_eX]

[DOI]

IEEE Signal Process. Lett., 2012

Sparse Representation Based Clustering for Integrated Analysis of Gene Copy Number Variation and Gene Expression Date.

[BibT_eX]

Int. J. Comput. Their Appl., 2012

Detection of common copy number variation with application to population clustering from next generation sequencing data.

[BibT_eX]

[DOI]

Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2012

Bio marker identification for diagnosis of schizophrenia with integrated analysis of fMRI and SNPs.

[BibT_eX]

[DOI]

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

Copy number variation estimation from multiple next-generation sequencing samples.

[BibT_eX]

[DOI]

Proceedings of the ACM International Conference on Bioinformatics, 2012

2011

From Bernoulli-Gaussian Deconvolution to Sparse Signal Restoration.

[BibT_eX]

[DOI]

IEEE Trans. Signal Process., 2011

A Compressed Sensing Based Approach for Subtyping of Leukemia from gene Expression Data.

[BibT_eX]

[DOI]

J. Bioinform. Comput. Biol., 2011

A sufficient condition on monotonic increase of the number of nonzero entry in the optimizer of L1 norm penalized least-square problem.

[BibT_eX]

[DOI]

CoRR, 2011

Classifying six glioma subtypes from combined gene expression and CNVs data based on compressive sensing approach.

[BibT_eX]

[DOI]

Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

Detection of copy number variation from next generation sequencing data with total variation penalized least square optimization.

[BibT_eX]

[DOI]

Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

Junbo Duan

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