Julie C. Mitchell

According to our database, Julie C. Mitchell authored at least 22 papers between 1996 and 2022.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of four.

2022

Identification of Small-Molecule Inhibitors of Fibroblast Growth Factor 23 Signaling via In Silico Hot Spot Prediction and Molecular Docking to α-Klotho.

Shih-Hsien Liu, Zhousheng Xiao, Sambit K. Mishra, Julie C. Mitchell, Jeremy C. Smith, L. Darryl Quarles, Loukas Petridis

J. Chem. Inf. Model., 2022

OpenMDlr: parallel, open-source tools for general protein structure modeling and refinement from pairwise distances.

Russell B. Davidson, Jess Woods, T. Chad Effler, Mathialakan Thavappiragasam, Julie C. Mitchell, Jerry M. Parks, Ada Sedova

Bioinform., 2022

2020

Supercomputer-Based Ensemble Docking Drug Discovery Pipeline with Application to Covid-19.

Atanu Acharya, Rupesh Agarwal, Matthew B. Baker, Jérôme Baudry, Debsindhu Bhowmik, Swen Böhm, Kendall G. Byler, Sam Yen-Chi Chen, Leighton Coates, Connor J. Cooper, Omar Demerdash, Isabella Daidone, John D. Eblen, Sally R. Ellingson, Stefano Forli, Jens Glaser, James C. Gumbart, John Gunnels, Oscar R. Hernandez, Stephan Irle, Daniel W. Kneller, Andrey Kovalevsky, Jeffrey M. Larkin, Travis J. Lawrence, Scott LeGrand, Shih-Hsien Liu, Julie C. Mitchell, Gilchan Park, Jerry M. Parks, Anna Pavlova, Loukas Petridis, Duncan Poole, Line Pouchard, Arvind Ramanathan, David M. Rogers, Diogo Santos-Martins, Aaron Scheinberg, Ada Sedova, Yue Shen, Jeremy C. Smith, Micholas Dean Smith, Carlos Soto, Aristides Tsaris, Mathialakan Thavappiragasam, Andreas F. Tillack, Josh Vincent Vermaas, Van Quan Vuong, Junqi Yin, Shinjae Yoo, Mai Zahran, Laura Zanetti Polzi

J. Chem. Inf. Model., 2020

iPNHOT: a knowledge-based approach for identifying protein-nucleic acid interaction hot spots.

Xiaolei Zhu, Ling Liu, Jingjing He, Ting Fang, Yi Xiong, Julie C. Mitchell

BMC Bioinform., 2020

2019

Predicting kinase inhibitors using bioactivity matrix derived informer sets.

Huikun Zhang, Spencer S. Ericksen, Ching-pei Lee, Gene E. Ananiev, Nathan Wlodarchak, Peng Yu, Julie C. Mitchell, Anthony Gitter, Stephen J. Wright, F. Michael Hoffmann, Scott A. Wildman, Michael A. Newton

PLoS Comput. Biol., 2019

2018

dbAMEPNI: a database of alanine mutagenic effects for protein-nucleic acid interactions.

Ling Liu, Yi Xiong, Hongyun Gao, Dong-Qing Wei, Julie C. Mitchell, Xiaolei Zhu

Database J. Biol. Databases Curation, 2018

2016

DBSI server: DNA binding site identifier.

Shravan Sukumar, Xiaolei Zhu, Spencer S. Ericksen, Julie C. Mitchell

Bioinform., 2016

2011

Optimizing ethanol production selectivity.

Raman Lall, Timothy J. Donohue, Simeone Marino, Julie C. Mitchell

Math. Comput. Model., 2011

2010

chipD: a web tool to design oligonucleotide probes for high-density tiling arrays.

Yann S. Dufour, Gary E. Wesenberg, Andrew J. Tritt, Jeremy D. Glasner, Nicole T. Perna, Julie C. Mitchell, Timothy J. Donohue

Nucleic Acids Res., 2010

Generating Uniform Incremental Grids on <i>SO</i>(3) Using the Hopf Fibration.

Anna Yershova, Swati Jain, Steven M. LaValle, Julie C. Mitchell

Int. J. Robotics Res., 2010

2009

Structure-Based Predictive Models for Allosteric Hot Spots.

Omar N. A. Demerdash, Michael D. Daily, Julie C. Mitchell

PLoS Comput. Biol., 2009

CUSA and CUDE: GPU-Accelerated Methods for Estimating Solvent Accessible Surface Area and Desolvation.

David Dynerman, Erick Butzlaff, Julie C. Mitchell

J. Comput. Biol., 2009

2008

Sampling Rotation Groups by Successive Orthogonal Images.

Julie C. Mitchell

SIAM J. Sci. Comput., 2008

KFC Server: interactive forecasting of protein interaction hot spots.

Steven J. Darnell, Laura H. LeGault, Julie C. Mitchell

Nucleic Acids Res., 2008

Optimal design of thermally stable proteins.

Ryan M. Bannen, Vanitha Suresh, George N. Phillips Jr., Stephen J. Wright, Julie C. Mitchell

Bioinform., 2008

Generating Uniform Incremental Grids on <i>SO</i>(3) Using the Hopf Fibration.

Anna Yershova, Steven M. LaValle, Julie C. Mitchell

Proceedings of the Algorithmic Foundation of Robotics VIII, 2008

2007

Global optimization in protein docking using clustering, underestimation and semidefinite programming.

Roummel F. Marcia, Julie C. Mitchell, Stephen J. Wright

Optim. Methods Softw., 2007

Multi-funnel optimization using Gaussian underestimation.

Roummel F. Marcia, Julie C. Mitchell, J. Ben Rosen

J. Glob. Optim., 2007

Metal reduction kinetics in <i>Shewanella</i>.

Raman Lall, Julie C. Mitchell

Bioinform., 2007

2005

Iterative Convex Quadratic Approximation for Global Optimization in Protein Docking.

Roummel F. Marcia, Julie C. Mitchell, J. Ben Rosen

Comput. Optim. Appl., 2005

1999

Coupled optimization in protein docking.

Julie C. Mitchell, J. Ben Rosen, Andrew T. Phillips, Lynn F. Ten Eyck

Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, 1999

1996

Determination of receptor-bound drug conformations by QSAR using flexible fitting to derive a molecular similarity index.

Carlos Alberto Montanari, M. S. Tute, A. E. Beezer, Julie C. Mitchell

J. Comput. Aided Mol. Des., 1996