Juliana S. Bernardes

According to our database, Juliana S. Bernardes authored at least 12 papers between 2007 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Reconstructing B cell lineage trees with minimum spanning tree and genotype abundances.

Nika Abdollahi, Lucile Jeusset, Anne Langlois De Septenville, Frédéric Davi, Juliana S. Bernardes

BMC Bioinform., December, 2023

Multi-Objective Wrapper Differential Evolution with Guided Initial Population for Feature Selection.

Gabriel Dominico, Juliana S. Bernardes, Leonardo L. Dorneles, Márcio Dorn

Proceedings of the IEEE Congress on Evolutionary Computation, 2023

2022

A multi-objective based clustering for inferring BCR clonal lineages from high-throughput B cell repertoire data.

Nika Abdollahi, Lucile Jeusset, Anne Langlois De Septenville, Hugues Ripoche, Frédéric Davi, Juliana S. Bernardes

PLoS Comput. Biol., 2022

2018

Meet-U: Educating through research immersion.

Nika Abdollahi, Alexandre Albani, Éric Anthony, Agnes Baud, Mélissa Cardon, Robert Clerc, Dariusz Czernecki, Romain Conte, Laurent David, Agathe Delaune, Samia Djerroud, Pauline Fourgoux, Nadège Guiglielmoni, Jeanne Laurentie, Nathalie Lehmann, Camille Lochard, Rémi Montagne, Vasiliki Myrodia, Vaitea Opuu, Elise Parey, Lélia Polit, Sylvain Privé, Chloé Quignot, Maria Ruiz-Cuevas, Mariam Sissoko, Nicolas Sompairac, Audrey Vallerix, Violaine Verrecchia, Marc Delarue, Raphaël Guérois, Yann Ponty, Sophie Sacquin-Mora, Alessandra Carbone, Christine Froidevaux, Stéphane Le Crom, Olivier Lespinet, Martin Weigt, Samer Abboud, Juliana S. Bernardes, Guillaume Bouvier, Chloé Dequeker, Arnaud Ferré, Patrick Fuchs, Gaëlle Lelandais, Pierre Poulain, Hugues Richard, Hugo Schweke, Elodie Laine, Anne Lopes

PLoS Comput. Biol., 2018

2016

Improvement in Protein Domain Identification Is Reached by Breaking Consensus, with the Agreement of Many Profiles and Domain Co-occurrence.

Juliana S. Bernardes, Gerson Zaverucha, Catherine Vaquero, Alessandra Carbone

PLoS Comput. Biol., 2016

A multi-objective optimization approach accurately resolves protein domain architectures.

Juliana S. Bernardes, Fabio R. J. Vieira, Gerson Zaverucha, Alessandra Carbone

Bioinform., 2016

2015

Evaluation and improvements of clustering algorithms for detecting remote homologous protein families.

Juliana S. Bernardes, Fabio R. J. Vieira, Lygia Costa, Gerson Zaverucha

BMC Bioinform., 2015

2012

Combining evolution and machine learning for functional annotation and classification of remote homologous proteins. (Evolution et apprentissage automatique pour l'annotation fonctionnelle et la classification des homologies lointains en protéines).

Juliana S. Bernardes

PhD thesis, 2012

2011

A discriminative method for family-based protein remote homology detection that combines inductive logic programming and propositional models.

Juliana S. Bernardes, Alessandra Carbone, Gerson Zaverucha

BMC Bioinform., 2011

2008

Structural descriptor database: a new tool for sequence-based functional site prediction.

Juliana S. Bernardes, Jorge H. Fernandez, Ana Tereza Ribeiro de Vasconcelos

BMC Bioinform., 2008

2007

A study of structural properties on profiles HMMs

Juliana S. Bernardes, Alberto M. R. Dávila, Vítor Santos Costa, Gerson Zaverucha

CoRR, 2007

Improving model construction of profile HMMs for remote homology detection through structural alignment.

Juliana S. Bernardes, Alberto M. R. Dávila, Vítor Santos Costa, Gerson Zaverucha

BMC Bioinform., 2007