Jue Ruan

According to our database, Jue Ruan authored at least 12 papers between 2005 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

BSAlign: A Library for Nucleotide Sequence Alignment.

Haojing Shao, Jue Ruan

Genom. Proteom. Bioinform., 2024

2023

The First High-quality Reference Genome of Sika Deer Provides Insights into High-tannin Adaptation.

Xiumei Xing, Cheng Ai, Tianjiao Wang, Yang Li, Huitao Liu, Pengfei Hu, Guiwu Wang, Huamiao Liu, Hongliang Wang, Ranran Zhang, Junjun Zheng, Xiaobo Wang, Lei Wang, Yuxiao Chang, Qian Qian, Jinghua Yu, Lixin Tang, Shigang Wu, Xiujuan Shao, Alun Li, Peng Cui, Wei Zhan, Sheng Zhao, Zhichao Wu, Xiqun Shao, Yimeng Dong, Min Rong, Yihong Tan, Xuezhe Cui, Shuzhuo Chang, Xingchao Song, Tongao Yang, Limin Sun, Yan Ju, Pei Zhao, Huanhuan Fan, Ying Liu, Xinhui Wang, Wanyun Yang, Min Yang, Tao Wei, Shanshan Song, Jiaping Xu, Zhigang Yue, Qiqi Liang, Chunyi Li, Jue Ruan, Fuhe Yang

Genom. Proteom. Bioinform., 2023

2022

<i>En Route</i> to Completion: What Is An Ideal Reference Genome?

Weihua Pan, Jue Ruan

Genom. Proteom. Bioinform., 2022

A Chromosome-level Genome Assembly of Wild Castor Provides New Insights into its Adaptive Evolution in Tropical Desert.

Jianjun Lu, Cheng Pan, Wei Fan, Wanfei Liu, Huayan Zhao, Donghai Li, Sen Wang, Lianlian Hu, Bing He, Kun Qian, Rui Qin, Jue Ruan, Qiang Lin, Shiyou Lü, Peng Cui

Genom. Proteom. Bioinform., 2022

2013

Determination of genomic copy number alteration emphasizing a restriction site-based strategy of genome re-sequencing.

Caihong Zheng, Xuexia Miao, Yanen Li, Ying Huang, Jue Ruan, Xi Ma, Li Wang, Chung-I Wu, Jun Cai

Bioinform., 2013

2012

Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads.

Zechen Chong, Jue Ruan, Chung-I Wu

Bioinform., 2012

2009

The Sequence Alignment/Map format and SAMtools.

Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor T. Marth, Gonçalo R. Abecasis, Richard Durbin

Bioinform., 2009

2008

TreeFam: 2008 Update.

Jue Ruan, Heng Li, Zhongzhong Chen, Avril Coghlan, Lachlan James M. Coin, Yiran Guo, Jean-Karim Hériché, Yafeng Hu, Karsten Kristiansen, Ruiqiang Li, Tao Liu, Alan Moses, Junjie Qin, Søren Vang, Albert J. Vilella, Abel Ureta-Vidal, Lars Bolund, Jun Wang, Richard Durbin

Nucleic Acids Res., 2008

2007

PigGIS: Pig Genomic Informatics System.

Jue Ruan, Yiran Guo, Heng Li, Yafeng Hu, Fei Song, Xin Huang, Karsten Kristiansen, Lars Bolund, Jun Wang

Nucleic Acids Res., 2007

2006

TreeFam: a curated database of phylogenetic trees of animal gene families.

Heng Li, Avril Coghlan, Jue Ruan, Lachlan James M. Coin, Jean-Karim Hériché, Lara Osmotherly, Ruiqiang Li, Tao Liu, Zhang Zhang, Lars Bolund, Gane Ka-Shu Wong, Wei-Mou Zheng, Paramvir Dehal, Jun Wang, Richard Durbin

Nucleic Acids Res., 2006

2005

SilkDB: a knowledgebase for silkworm biology and genomics.

Jing Wang, Qingyou Xia, Ximiao He, Mingtao Dai, Jue Ruan, Jie Chen, Guo Yu, Haifeng Yuan, Yafeng Hu, Ruiqiang Li, Tao Feng, Chen Ye, Cheng Lu, Jun Wang, Songgang Li, Gane Ka-Shu Wong, Huanming Yang, Jian Wang, Zhonghuai Xiang, Zeyang Zhou, Jun Yu

Nucleic Acids Res., 2005

ChickVD: a sequence variation database for the chicken genome.

Jing Wang, Ximiao He, Jue Ruan, Mingtao Dai, Jie Chen, Yong Zhang, Yafeng Hu, Chen Ye, Shengting Li, Lijuan Cong, Lin Fang, Bin Liu, Songgang Li, Jian Wang, David W. Burt, Gane Ka-Shu Wong, Jun Yu, Huanming Yang, Jun Wang

Nucleic Acids Res., 2005