Judith Klein-Seetharaman

According to our database, Judith Klein-Seetharaman authored at least 35 papers between 2003 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Use of What-if Scenarios to Help Explain Artificial Intelligence Models for Neonatal Health.

Abdullah Mamun, Lawrence D. Devoe, Mark I. Evans, David W. Britt, Judith Klein-Seetharaman, Hassan Ghasemzadeh

CoRR, 2024

2023

Neonatal Risk Modeling and Prediction.

Abdullah Mamun, Chia-Cheng Kuo, David W. Britt, Lawrence D. Devoe, Mark I. Evans, Hassan Ghasemzadeh, Judith Klein-Seetharaman

Proceedings of the 19th IEEE International Conference on Body Sensor Networks, 2023

2022

Building a Quantum Engineering Undergraduate Program.

Abraham Asfaw, Alexandre Blais, Kenneth R. Brown, Jonathan Candelaria, Christopher Cantwell, Lincoln D. Carr, Joshua Combes, Dripto M. Debroy, John M. Donohue, Sophia E. Economou, Emily Edwards, Michael F. J. Fox, Steven M. Girvin, Alan Ho, Hilary M. Hurst, Zubin Jacob, Blake R. Johnson, Ezekiel Johnston-Halperin, Robert Joynt, Eliot Kapit, Judith Klein-Seetharaman, Martin Laforest, H. J. Lewandowski, Theresa W. Lynn, Corey Rae H. McRae, Celia Merzbacher, Spyridon Michalakis, Prineha Narang, William D. Oliver, Jens Palsberg, David P. Pappas, Michael G. Raymer, David J. Reilly, Mark Saffman, Thomas A. Searles, Jeffrey H. Shapiro, Chandralekha Singh

IEEE Trans. Educ., 2022

2021

Bioinformatics of corals: Investigating heterogeneous omics data from coral holobionts for insight into reef health and resillience.

Lenore J. Cowen, Judith Klein-Seetharaman, Hollie Putnam

Proceedings of the Biocomputing 2021: Proceedings of the Pacific Symposium, 2021

Protein sequence models for prediction and comparative analysis of the SARS-CoV-2 - human interactome.

Meghana Kshirsagar, Nure Tasnina, Michael D. Ward, Jeffrey N. Law, T. M. Murali, Juan M. Lavista Ferres, Gregory R. Bowman, Judith Klein-Seetharaman

Proceedings of the Biocomputing 2021: Proceedings of the Pacific Symposium, 2021

2017

Insulin biosensor development: a case study.

Narinder Sanghera, Alexander Anderson, Nick Nuar, Can Xie, Daniel Mitchell, Judith Klein-Seetharaman

Int. J. Parallel Emergent Distributed Syst., 2017

Multitask Matrix Completion for Learning Protein Interactions Across Diseases.

Meghana Kshirsagar, Keerthiram Murugesan, Jaime G. Carbonell, Judith Klein-Seetharaman

J. Comput. Biol., 2017

2015

Refining Literature Curated Protein Interactions Using Expert Opinions.

Öznur Tastan, Yanjun Qi, Jaime G. Carbonell, Judith Klein-Seetharaman

Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

2013

Multitask learning for host-pathogen protein interactions.

Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman

Bioinform., 2013

2012

Signal Processing in Genomics and Proteomics: Defining Its Role [From the Guest Editors].

Nevenka Dimitrova, Judith Klein-Seetharaman, Peter Beyerlein, Ahmed H. Tewfik

IEEE Signal Process. Mag., 2012

BIPS: BIANA Interolog Prediction Server. A tool for protein-protein interaction inference.

Javier García-García, Sylvia Schleker, Judith Klein-Seetharaman, Baldo Oliva

Nucleic Acids Res., 2012

Techniques to cope with missing data in host-pathogen protein interaction prediction.

Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman

Bioinform., 2012

Determining Confidence of Predicted Interactions Between HIV-1 and Human Proteins Using Conformal Method.

Ilia Nouretdinov, Alex Gammerman, Yanjun Qi, Judith Klein-Seetharaman

Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

2011

Virus interactions with human signal transduction pathways.

Zhongming Zhao, Junfeng Xia, Öznur Tastan, Irtisha Singh, Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman

Int. J. Comput. Biol. Drug Des., 2011

2010

Semi-supervised multi-task learning for predicting interactions between HIV-1 and human proteins.

Yanjun Qi, Öznur Tastan, Jaime G. Carbonell, Judith Klein-Seetharaman, Jason Weston

Bioinform., 2010

Analogies between structural and systems biology and systems-of-systems engineering in dynamic environments.

Subhodeep Moitra, Naveena Yanamala, Öznur Tastan, Irtisha Singh, Christopher James Langmead, Judith Klein-Seetharaman

Proceedings of the 5th International Conference on System of Systems Engineering, 2010

Comparison of virus interactions with human signal transduction pathways.

Irtisha Singh, Öznur Tastan, Judith Klein-Seetharaman

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009

Prediction of Interactions Between HIV-1 and Human Proteins by Information Integration.

Öznur Tastan, Yanjun Qi, Jaime G. Carbonell, Judith Klein-Seetharaman

Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

Communication interception of human signal transduction pathways by Human Immunodeficiency Virus-1.

Sivaraman Balakrishnan, Öznur Tastan, Jaime G. Carbonell, Judith Klein-Seetharaman

Proceedings of the 2009 IEEE International Workshop on Genomic Signal Processing and Statistics, 2009

2008

Preferential binding of allosteric modulators to active and inactive conformational states of metabotropic glutamate receptors.

Naveena Yanamala, Kalyan C. Tirupula, Judith Klein-Seetharaman

BMC Bioinform., 2008

Transmembrane helix prediction using amino acid property features and latent semantic analysis.

Madhavi Ganapathiraju, Narayanaswamy Balakrishnan, Raj Reddy, Judith Klein-Seetharaman

BMC Bioinform., 2008

Protein complex identification by supervised graph local clustering.

Yanjun Qi, Fernanda Balem, Christos Faloutsos, Judith Klein-Seetharaman, Ziv Bar-Joseph

Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

2007

A mixture of feature experts approach for protein-protein interaction prediction.

Yanjun Qi, Judith Klein-Seetharaman, Ziv Bar-Joseph

BMC Bioinform., 2007

TMpro web server and web service: transmembrane helix prediction through amino acid property analysis.

Madhavi Ganapathiraju, Christopher Jon Jursa, Hassan A. Karimi, Judith Klein-Seetharaman

Bioinform., 2007

2006

Collaborative Discovery Through Biological Language Modeling Interface.

Madhavi Ganapathiraju, Vijayalaxmi Manoharan, Raj Reddy, Judith Klein-Seetharaman

Proceedings of the Ambient Intelligence in Everyday Life - Foreword by Emile Aarts, 2006

2005

BioSim--a biomedical character-based problem solving environment.

Yang Cai, Ingo Snel, Betty Cheng, B. Suman Bharathi, Clementine Klein, Judith Klein-Seetharaman

Future Gener. Comput. Syst., 2005

Random Forest Similarity for Protein-Protein Interaction Prediction from Multiple Sources.

Yanjun Qi, Judith Klein-Seetharaman, Ziv Bar-Joseph

Proceedings of the Biocomputing 2005, 2005

A Machine Text-Inspired Machine Learning Approach for Identification of Transmembrane Helix Boundaries.

Betty Yee Man Cheng, Jaime G. Carbonell, Judith Klein-Seetharaman

Proceedings of the Foundations of Intelligent Systems, 15th International Symposium, 2005

2004

Characterization of protein secondary structure.

Madhavi K. Ganapathiraju, Judith Klein-Seetharaman, Narayanaswamy Balakrishnan, Raj Reddy

IEEE Signal Process. Mag., 2004

Comparison of probabilistic combination methods for protein secondary structure prediction.

Yan Liu, Jaime G. Carbonell, Judith Klein-Seetharaman, Vanathi Gopalakrishnan

Bioinform., 2004

Context sensitive vocabulary and its application in protein secondary structure prediction.

Yan Liu, Jaime G. Carbonell, Judith Klein-Seetharaman, Vanathi Gopalakrishnan

Proceedings of the SIGIR 2004: Proceedings of the 27th Annual International ACM SIGIR Conference on Research and Development in Information Retrieval, 2004

Identification of fundamental building blocks in protein sequences using statistical association measures.

Deborah K. Weisser, Judith Klein-Seetharaman

Proceedings of the 2004 ACM Symposium on Applied Computing (SAC), 2004

Computational Biology and Language.

Madhavi Ganapathiraju, Narayanas Balakrishnan, Raj Reddy, Judith Klein-Seetharaman

Proceedings of the Ambient Intelligence for Scientific Discovery, 2004

Ambient intelligence for scientific discovery.

Yang Cai, Judith Klein-Seetharaman

Proceedings of the Extended abstracts of the 2004 Conference on Human Factors in Computing Systems, 2004

2003

Towards Biomedical Problem Solving in a Game Environment.

Yang Cai, Ingo Snel, B. Suman Bharathi, Clementine Klein, Judith Klein-Seetharaman

Proceedings of the Computational Science - ICCS 2003, 2003