Juan Xu

According to our database, Juan Xu authored at least 19 papers between 2013 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Cancer Stemness Online: A Resource for Investigating Cancer Stemness and Associations with Immune Response.

Weiwei Zhou, Minghai Su, Tiantongfei Jiang, Yunjin Xie, Jingyi Shi, Yingying Ma, Kang Xu, Gang Xu, Yongsheng Li, Juan Xu

Genom. Proteom. Bioinform., 2024

MicroProteinDB: A database to provide knowledge on sequences, structures and function of ncRNA-derived microproteins.

Yinan Liang, Dezhong Lv, Kefan Liu, Liting Yang, Huan Shu, Luan Wen, Chongwen Lv, Qisen Sun, Jiaqi Yin, Hui Liu, Juan Xu, Zhigang Liu, Na Ding

Comput. Biol. Medicine, 2024

2023

Open a new epoch of arsenic trioxide investigation: ATOdb.

Yanan Jiang, Jianing Li, Yujie Liu, Xiuyun Shen, Junyi Li, Fengnan Zhi, Juan Xu, Xia Li, Tingting Shao, Yingqi Xu

Comput. Biol. Medicine, October, 2023

Multi-omics characterization of RNA binding proteins reveals disease comorbidities and potential drugs in COVID-19.

Jiwei Pan, Yueying Gao, Huirui Han, Tao Pan, Jing Guo, Si Li, Juan Xu, Yongsheng Li

Comput. Biol. Medicine, March, 2023

ImmCluster: an ensemble resource for immunology cell type clustering and annotations in normal and cancerous tissues.

Tiantongfei Jiang, Weiwei Zhou, Qi Sheng, Jiaxin Yu, Yunjin Xie, Na Ding, Yunpeng Zhang, Juan Xu, Yongsheng Li

Nucleic Acids Res., January, 2023

IEAtlas: an atlas of HLA-presented immune epitopes derived from non-coding regions.

Yangyang Cai, Dezhong Lv, Donghao Li, Jiaqi Yin, Yingying Ma, Ya Luo, Limei Fu, Na Ding, Yongsheng Li, Zhenwei Pan, Xia Li, Juan Xu

Nucleic Acids Res., January, 2023

2022

TransLnc: a comprehensive resource for translatable lncRNAs extends immunopeptidome.

Dezhong Lv, Zhenghong Chang, Yangyang Cai, Junyi Li, Liping Wang, Qiushuang Jiang, Kang Xu, Na Ding, Xia Li, Juan Xu, Yongsheng Li

Nucleic Acids Res., 2022

PRES: a webserver for decoding the functional perturbations of RNA editing sites.

Dezhong Lv, Kang Xu, Changbo Yang, Yujie Liu, Ya Luo, Weiwei Zhou, Haozhe Zou, Yangyang Cai, Na Ding, Xia Li, Tingting Shao, Yongsheng Li, Juan Xu

Briefings Bioinform., 2022

Shedding light on the hidden human proteome expands immunopeptidome in cancer.

Yongsheng Li, Yunpeng Zhang, Tao Pan, Ping Zhou, Weiwei Zhou, Yueying Gao, Shaojiang Zheng, Juan Xu

Briefings Bioinform., 2022

2021

SurvivalMeth: a web server to investigate the effect of DNA methylation-related functional elements on prognosis.

Chunlong Zhang, Ning Zhao, Xue Zhang, Jun Xiao, Junyi Li, Dezhong Lv, Weiwei Zhou, Yongsheng Li, Juan Xu, Xia Li

Briefings Bioinform., 2021

CeRNASeek: an R package for identification and analysis of ceRNA regulation.

Mengying Zhang, Xiyun Jin, Junyi Li, Yi Tian, Qi Wang, Xinhui Li, Juan Xu, Yongsheng Li, Xia Li

Briefings Bioinform., 2021

2019

Survey of miRNA-miRNA cooperative regulation principles across cancer types.

Tingting Shao, Guangjuan Wang, Hong Chen, Yunjin Xie, Xiyun Jin, Jing Bai, Juan Xu, Xia Li, Jian Huang, Yan Jin, Yongsheng Li

Briefings Bioinform., 2019

Systematic review of computational methods for identifying miRNA-mediated RNA-RNA crosstalk.

Yongsheng Li, Xiyun Jin, Zishan Wang, Lili Li, Hong Chen, Xiaoyu Lin, Song Yi, Yunpeng Zhang, Juan Xu

Briefings Bioinform., 2019

Systematic review regulatory principles of non-coding RNAs in cardiovascular diseases.

Yongsheng Li, Caiqin Huo, Tao Pan, Lili Li, Xiyun Jin, Xiaoyu Lin, Juan Chen, Jinwen Zhang, Zheng Guo, Juan Xu, Xia Li

Briefings Bioinform., 2019

Landscape of the long non-coding RNA transcriptome in human heart.

Chunjie Jiang, Na Ding, Junyi Li, Xiyun Jin, Lili Li, Tao Pan, Caiqin Huo, Yongsheng Li, Juan Xu, Xia Li

Briefings Bioinform., 2019

2018

Combinatorial epigenetic regulation of non-coding RNAs has profound effects on oncogenic pathways in breast cancer subtypes.

Juan Xu, Zishan Wang, Shengli Li, Juan Chen, Jinwen Zhang, Chunjie Jiang, Zheng Zhao, Jing Li, Yongsheng Li, Xia Li

Briefings Bioinform., 2018

2017

miRNA-miRNA crosstalk: from genomics to phenomics.

Juan Xu, Tingting Shao, Na Ding, Yongsheng Li, Xia Li

Briefings Bioinform., 2017

2015

Co-LncRNA: investigating the lncRNA combinatorial effects in GO annotations and KEGG pathways based on human RNA-Seq data.

Zheng Zhao, Jing Bai, Aiwei Wu, Yuan Wang, Jinwen Zhang, Zishan Wang, Yongsheng Li, Juan Xu, Xia Li

Database J. Biol. Databases Curation, 2015

2013

Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes.

Hongbo Shi, Juan Xu, Guangde Zhang, Liangde Xu, Chunquan Li, Li Wang, Zheng Zhao, Wei Jiang, Zheng Guo, Xia Li

BMC Syst. Biol., 2013