Juan Liu

Orcid: 0000-0001-9344-7415

Affiliations:
  • Wuhan University, School of Computer Science, Institute of Artificial Intelligence, China


According to our database1, Juan Liu authored at least 93 papers between 2006 and 2024.

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Bibliography

2024
Interpretable detector for cervical cytology using self-attention and cell origin group guidance.
Eng. Appl. Artif. Intell., 2024

CRDet: A circle representation detector for lung granulomas based on multi-scale attention features with center point calibration.
Comput. Medical Imaging Graph., 2024

Planning biosynthetic pathways of target molecules based on metabolic reaction prediction and AND-OR tree search.
Comput. Biol. Chem., 2024

Advancing Drug-Target Interaction prediction with BERT and subsequence embedding.
Comput. Biol. Chem., 2024

A novel multilevel iterative training strategy for the ResNet50 based mitotic cell classifier.
Comput. Biol. Chem., 2024

Variable-Length Promoter Strength Prediction Based on Graph Convolution.
Proceedings of the Bioinformatics Research and Applications - 20th International Symposium, 2024

A Multi-scale Multivariate Time Series Classification Method Based on Bag of Patterns.
Proceedings of the Advanced Intelligent Computing Technology and Applications, 2024

BS2CL: Balanced Self-supervised Contrastive Learning for Thyroid Cytology Whole Slide Image Multi-classification.
Proceedings of the Advanced Intelligent Computing Technology and Applications, 2024

2023
An adaptive multi-modal hybrid model for classifying thyroid nodules by combining ultrasound and infrared thermal images.
BMC Bioinform., December, 2023

A systematic review of deep learning-based cervical cytology screening: from cell identification to whole slide image analysis.
Artif. Intell. Rev., November, 2023

FragDPI: a novel drug-protein interaction prediction model based on fragment understanding and unified coding.
Frontiers Comput. Sci., October, 2023

DeepRT: Predicting compounds presence in pathway modules and classifying into module classes using deep neural networks based on molecular properties.
J. Bioinform. Comput. Biol., August, 2023

Development of Automatic Portable Pathology Scanner and Its Evaluation for Clinical Practice.
J. Digit. Imaging, June, 2023

FingerDTA: A Fingerprint-Embedding Framework for Drug-Target Binding Affinity Prediction.
Big Data Min. Anal., March, 2023

Pyramid Shape-Aware Semi-supervised Learning for Thyroid Nodules Segmentation in Ultrasound Images.
Proceedings of the Pattern Recognition and Computer Vision - 6th Chinese Conference, 2023

Medical Knowledge Guided Intra-Specimen Reference Network for Cervical Cell Classification.
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023

DeepMAT: Predicting Metabolic Pathways of Compounds Using a Message Passing and Attention-Based Neural Networks.
Proceedings of the Advanced Intelligent Computing Technology and Applications, 2023

LGVIT: Local-Global Vision Transformer for Breast Cancer Histopathological Image Classification.
Proceedings of the IEEE International Conference on Acoustics, 2023

DDN: Dynamic Aggregation Enhanced Dual-Stream Network for Medical Image Classification.
Proceedings of the IEEE International Conference on Acoustics, 2023

MASKED-AP: Attention Pyramid Convolutional Neural Network with Mask for Cervical Cell Classification.
Proceedings of the IEEE International Conference on Acoustics, 2023

Classifying Pathological Images Based on Multi-Instance Learning and End-to-End Attention Pooling.
Proceedings of the IEEE International Conference on Acoustics, 2023

SLPFA: Protein Structure-Label Embedding Attention Network for Protein Function Annotation.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

MSCCNet: Multi-Scale Convolution-Capsule Network for Cervical Cell Classification.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022
CSCD2: an integrated interactional database of cancer-specific circular RNAs.
Nucleic Acids Res., 2022

DSCC: a data set of cervical cell images for cervical cytology screening.
Int. J. Data Min. Bioinform., 2022

Deeply Supervised Layer Selective Attention Network: Towards Label-Efficient Learning for Medical Image Classification.
CoRR, 2022

DeepRF: A deep learning method for predicting metabolic pathways in organisms based on annotated genomes.
Comput. Biol. Medicine, 2022

CNN-based two-branch multi-scale feature extraction network for retrosynthesis prediction.
BMC Bioinform., 2022

A novel hybrid framework for metabolic pathways prediction based on the graph attention network.
BMC Bioinform., 2022

Accurate classification of white blood cells by coupling pre-trained ResNet and DenseNet with SCAM mechanism.
BMC Bioinform., 2022

Channel Spatial Collaborative Attention Network for Fine-Grained Classification of Cervical Cells.
Proceedings of the Neural Information Processing - 29th International Conference, 2022

A Novel IoMT System for Pathological Diagnosis Based on Intelligent Mobile Scanner and Whole Slide Image Stitching Method.
Proceedings of the Intelligent Computing Methodologies - 18th International Conference, 2022

Cross-Attention Based Multi-Scale Feature Fusion Vision Transformer For Breast Ultrasound Image Classification.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Classifying Cervical Histopathological Whole Slide Images via Deep Multi-Instance Transfer Learning.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Predicting Tumor Mutation Burden of TNBC Based on Nuclei Scores of Histopathological Images.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

A Context-Guided Attention Method for Integrating Features of Histopathological Patches.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021
Group-Sparse SVD Models via $L_1$L1- and $L_0$L0-norm Penalties and their Applications in Biological Data.
IEEE Trans. Knowl. Data Eng., 2021

CytoBrain: Cervical Cancer Screening System Based on Deep Learning Technology.
J. Comput. Sci. Technol., 2021

COMNA: Core-attachment based protein complex detection via multiple network alignment.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

TransMixNet: An Attention Based Double-Branch Model for White Blood Cell Classification and Its Training with the Fuzzified Training Data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020
DAAT: A New Method to Train Convolutional Neural Network on Atrial Fibrillation Detection.
Proceedings of the Intelligent Computing Methodologies - 16th International Conference, 2020

Multi-Class Metabolic Pathway Prediction by Graph Attention-Based Deep Learning Method.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

GPPIAL: A New Global PPI Network Aligner Based on Orthologs.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

2019
Prediction of drug-disease associations based on ensemble meta paths and singular value decomposition.
BMC Bioinform., 2019

Gene Functional Module Discovery via Integrating Gene Expression and PPI Network Data.
Proceedings of the Intelligent Computing Theories and Application, 2019

Predicting Drug-Disease Treatment Associations Based on Topological Similarity and Singular Value Decomposition.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

A Robust Approach to Locate HER2 and CEN17 Signals in Varied FISH Images.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018
Network-Regularized Sparse Logistic Regression Models for Clinical Risk Prediction and Biomarker Discovery.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

基于两步聚类和随机森林的乳腺腺管自动识别方法 (Automatic Recognition of Breast Gland Based on Two-step Clustering and Random Forest).
计算机科学, 2018

Prediction of drug-disease treatment relations based on positive and unlabeled samples.
J. Intell. Fuzzy Syst., 2018

Group-sparse SVD Models and Their Applications in Biological Data.
CoRR, 2018

Edge-group sparse PCA for network-guided high dimensional data analysis.
Bioinform., 2018

2017
SynBioEcoli: a comprehensive metabolism network of engineered E. coli in three dimensional visualization.
Quant. Biol., 2017

一种稀疏可控的主成分分析方法 (Sparse Controllable Principal Component Analysis Method).
计算机科学, 2017

Sparse Weighted Canonical Correlation Analysis.
CoRR, 2017

Differential function analysis: identifying structure and activation variations in dysregulated pathways.
Sci. China Inf. Sci., 2017

Comparative network stratification analysis for identifying functional interpretable network biomarkers.
BMC Bioinform., 2017

Pattern fusion analysis by adaptive alignment of multiple heterogeneous omics data.
Bioinform., 2017

GMAlign: A new network aligner for revealing large conserved functional components.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016
中文指代消解模型的对比研究 (Comparison of Chinese Anaphora Resolution Models).
计算机科学, 2016

Multi-fields model for predicting target-ligand interaction.
Neurocomputing, 2016

L0-norm Sparse Graph-regularized SVD for Biclustering.
CoRR, 2016

BioSynther: a customized biosynthetic potential explorer.
Bioinform., 2016

Integration of multiple heterogeneous omics data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Semi-supervised graph cut algorithm for drug repositioning by integrating drug, disease and genomic associations.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015
Predicting target-ligand interactions using protein ligand-binding site and ligand substructures.
BMC Syst. Biol., 2015

Identification of phenotypic networks based on whole transcriptome by comparative network decomposition.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

A novel two-stage method for identifying microRNA-gene regulatory modules in breast cancer.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014
Negative correlation based gene markers identification in integrative gene expression data.
Int. J. Data Min. Bioinform., 2014

Pairwise input neural network for target-ligand interaction prediction.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

MMSE: A generalized coherence measure for identifying linear patterns.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013
Integrating peptides' sequence and energy of contact residues information improves prediction of peptide and HLA-I binding with unknown alleles.
BMC Bioinform., 2013

Predicting immunogenic T-cell epitopes by combining various sequence-derived features.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012
Predicting linear B-cell epitopes by using sequence-derived structural and physicochemical features.
Int. J. Data Min. Bioinform., 2012

Predicting Binding-Peptide of HLA-I on Unknown Alleles by Integrating Sequence Information and Energies of Contact Residues.
Proceedings of the Emerging Intelligent Computing Technology and Applications, 2012

2011
Prediction of conformational B-cell epitopes from 3D structures by random forest with a distance-based feature.
BMC Bioinform., 2011

A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules.
Bioinform., 2011

Prediction of Heme Binding Sites in Heme Proteins Using an Integrative Sequence Profile Coupling Evolutionary Information with Physicochemical Properties.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

2010
Discovering conditional co-regulated protein complexes by integrating diverse data sources.
BMC Syst. Biol., 2010

Quantitative prediction of MHC-II binding affinity using particle swarm optimization.
Artif. Intell. Medicine, 2010

Mixture classification model based on clinical markers for breast cancer prognosis.
Artif. Intell. Medicine, 2010

Discovering negative correlated gene sets from integrative gene expression data for cancer prognosis.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

2009
Quantitative prediction of MHC-II peptide binding affinity using relevance vector machine.
Appl. Intell., 2009

Design E-learning Recommendation System Using PIRT and VPRS Model.
Proceedings of the Web Information Systems and Mining, International Conference, 2009

Supporting E-Learning System with Modified Bayesian Rough Set Model.
Proceedings of the Advances in Neural Networks, 2009

Personalized SCORM Learning Experience Based on Rating Scale Model.
Proceedings of the Advances in Neural Networks, 2009

Biological Pathway Conducting Microarray-Based Cancer Classification.
Proceedings of the 2nd International Conference on BioMedical Engineering and Informatics, 2009

2008
A Bayesian regression approach to the prediction of MHC-II binding affinity.
Comput. Methods Programs Biomed., 2008

Quantitative Prediction of MHC-II Peptide Binding Affinity Using Global Description of Peptide Sequences.
Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, 2008

2007
Analysis on Time-lagged Gene Clusters in Time Series Gene Expression Data.
Proceedings of the Computational Intelligence and Security, International Conference, 2007

Improved Variable Precision Rough Set Model and its Application to Distance Learning.
Proceedings of the Computational Intelligence and Security, International Conference, 2007

2006
A Novel Clustering Method for Analysis of Gene Microarray Expression Data.
Proceedings of the Data Mining for Biomedical Applications, PAKDD 2006 Workshop, 2006

Estimation Distribution of Algorithm for Fuzzy Clustering Gene Expression Data.
Proceedings of the Advances in Natural Computation, Second International Conference, 2006


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