Josien P. W. Pluim

Orcid: 0000-0001-7327-9178

According to our database1, Josien P. W. Pluim authored at least 163 papers between 1995 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Awards

IEEE Fellow

IEEE Fellow 2018, "For contributions to medical image analysis".

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
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Links

Online presence:

On csauthors.net:

Bibliography

2024
LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset.
IEEE J. Biomed. Health Informatics, March, 2024

Generative AI for Synthetic Data Across Multiple Medical Modalities: A Systematic Review of Recent Developments and Challenges.
CoRR, 2024

Multi-head Attention-based Deep Multiple Instance Learning.
CoRR, 2024

WSI-SAM: Multi-resolution Segment Anything Model (SAM) for histopathology whole-slide images.
CoRR, 2024

Multiple Instance Learning with random sampling for Whole Slide Image Classification.
CoRR, 2024

Brain MR image simulation for deep learning based medical image analysis networks.
Comput. Methods Programs Biomed., 2024

Multi-modal brain tumor segmentation via conditional synthesis with Fourier domain adaptation.
Comput. Medical Imaging Graph., 2024

Assessing the Robustness of Image Registration Models Under Domain Shifts with Learnable Input Images.
Proceedings of the Biomedical Image Registration - 11th International Workshop, 2024

Dataset Distribution Impacts Model Fairness: Single Vs. Multi-task Learning.
Proceedings of the Ethics and Fairness in Medical Imaging, 2024

Self-Supervised Pretraining for Cardiovascular Magnetic Resonance Cine Segmentation.
Proceedings of the Data Engineering in Medical Imaging - Second MICCAI Workshop, 2024

2023
Reducing segmentation failures in cardiac MRI via late feature fusion and GAN-based augmentation.
Comput. Biol. Medicine, July, 2023

A Framework for Simulating Cardiac MR Images With Varying Anatomy and Contrast.
IEEE Trans. Medical Imaging, March, 2023

On the usability of synthetic data for improving the robustness of deep learning-based segmentation of cardiac magnetic resonance images.
Medical Image Anal., 2023

Histogram- and Diffusion-Based Medical Out-of-Distribution Detection.
CoRR, 2023

Effect of latent space distribution on the segmentation of images with multiple annotations.
CoRR, 2023

LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset.
CoRR, 2023

The Importance of Realistic Training Deformations for Respiratory CT Registration.
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023

2022
Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI.
NeuroImage, 2022

Pathology Synthesis of 3D Consistent Cardiac MR Im-ages Using 2D VAEs and GANs.
CoRR, 2022

sim2real: Cardiac MR Image Simulation-to-Real Translation via Unsupervised GANs.
CoRR, 2022

Influence of uncertainty estimation techniques on false-positive reduction in liver lesion detection.
CoRR, 2022

PROMISSING: Pruning Missing Values in Neural Networks.
CoRR, 2022

Label-informed cardiac magnetic resonance image synthesis through conditional generative adversarial networks.
Comput. Medical Imaging Graph., 2022

Cardiac MR Image Segmentation and Quality Control in the Presence of Respiratory Motion Artifacts Using Simulated Data.
Proceedings of the Statistical Atlases and Computational Models of the Heart. Regular and CMRxMotion Challenge Papers, 2022

A Stratified Cascaded Approach for Brain Tumor Segmentation with the Aid of Multi-modal Synthetic Data.
Proceedings of the Data Augmentation, Labelling, and Imperfections, 2022

An Image Feature Mapping Model for Continuous Longitudinal Data Completion and Generation of Synthetic Patient Trajectories.
Proceedings of the Deep Generative Models - Second MICCAI Workshop, 2022

Generalized Probabilistic U-Net for Medical Image Segementation.
Proceedings of the Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, 2022

Pathology Synthesis of 3D Consistent Cardiac MR Images Using 2D VAEs and GANs.
Proceedings of the Simulation and Synthesis in Medical Imaging, 2022

2021
Deep Learning Regression for Prostate Cancer Detection and Grading in Bi-Parametric MRI.
IEEE Trans. Biomed. Eng., 2021

Advanced Ultrasound and Photoacoustic Imaging in Cardiology.
Sensors, 2021

Roto-translation equivariant convolutional networks: Application to histopathology image analysis.
Medical Image Anal., 2021

Adversarial attack vulnerability of medical image analysis systems: Unexplored factors.
Medical Image Anal., 2021

ENHANCE (ENriching Health data by ANnotations of Crowd and Experts): A case study for skin lesion classification.
CoRR, 2021

Corneal Pachymetry by AS-OCT after Descemet's Membrane Endothelial Keratoplasty.
CoRR, 2021

Late Fusion U-Net with GAN-Based Augmentation for Generalizable Cardiac MRI Segmentation.
Proceedings of the Statistical Atlases and Computational Models of the Heart. Multi-Disease, Multi-View, and Multi-Center Right Ventricular Segmentation in Cardiac MRI Challenge, 2021

Radial U-Net: Improving DMEK Graft Detachment Segmentation in Radial AS-OCT Scans.
Proceedings of the Ophthalmic Medical Image Analysis - 8th International Workshop, 2021

Using Uncertainty Estimation To Reduce False Positives In Liver Lesion Detection.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

Hybrid Deep Neural Network for Brachial Plexus Nerve Segmentation in Ultrasound Images.
Proceedings of the 29th European Signal Processing Conference, 2021

clDice - A Novel Topology-Preserving Loss Function for Tubular Structure Segmentation.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2021

2020
Progressively Trained Convolutional Neural Networks for Deformable Image Registration.
IEEE Trans. Medical Imaging, 2020

Deep Learning-Based Grading of Ductal Carcinoma In Situ in Breast Histopathology Images.
CoRR, 2020

Orientation-Disentangled Unsupervised Representation Learning for Computational Pathology.
CoRR, 2020

Primary Tumor Origin Classification of Lung Nodules in Spectral CT using Transfer Learning.
CoRR, 2020

Quantifying Graft Detachment after Descemet's Membrane Endothelial Keratoplasty with Deep Convolutional Neural Networks.
CoRR, 2020

clDice - a Topology-Preserving Loss Function for Tubular Structure Segmentation.
CoRR, 2020

4D Semantic Cardiac Magnetic Resonance Image Synthesis on XCAT Anatomical Model.
Proceedings of the International Conference on Medical Imaging with Deep Learning, 2020

XCAT-GAN for Synthesizing 3D Consistent Labeled Cardiac MR Images on Anatomically Variable XCAT Phantoms.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Direct classification of type 2 diabetes from retinal fundus images in a population-based sample from the Maastricht study.
Proceedings of the Medical Imaging 2020: Computer-Aided Diagnosis, 2020

Segmentation and Classification of Melanoma and Nevus in Whole Slide Images.
Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

2019
Benchmark on Automatic Six-Month-Old Infant Brain Segmentation Algorithms: The iSeg-2017 Challenge.
IEEE Trans. Medical Imaging, 2019

Pulmonary CT Registration Through Supervised Learning With Convolutional Neural Networks.
IEEE Trans. Medical Imaging, 2019

Predicting breast tumor proliferation from whole-slide images: The TUPAC16 challenge.
Medical Image Anal., 2019

Not-so-supervised: A survey of semi-supervised, multi-instance, and transfer learning in medical image analysis.
Medical Image Anal., 2019

Deep learning assessment of breast terminal duct lobular unit involution: towards automated prediction of breast cancer risk.
CoRR, 2019

Liver segmentation and metastases detection in MR images using convolutional neural networks.
CoRR, 2019

Convolutional Neural Network-Based Regression for Quantification of Brain Characteristics Using MRI.
Proceedings of the New Knowledge in Information Systems and Technologies, 2019

Optimal input configuration of dynamic contrast enhanced MRI in convolutional neural networks for liver segmentation.
Proceedings of the Medical Imaging 2019: Image Processing, 2019

Approximation of a pipeline of unsupervised retina image analysis methods with a CNN.
Proceedings of the Medical Imaging 2019: Image Processing, 2019

Progressively growing convolutional networks for end-to-end deformable image registration.
Proceedings of the Medical Imaging 2019: Image Processing, 2019

Detection of acini in histopathology slides: towards automated prediction of breast cancer risk.
Proceedings of the Medical Imaging 2019: Digital Pathology, 2019

Capturing Single-Cell Phenotypic Variation via Unsupervised Representation Learning.
Proceedings of the International Conference on Medical Imaging with Deep Learning, 2019

2018
Reconnection of Interrupted Curvilinear Structures via Cortically Inspired Completion for Ophthalmologic Images.
IEEE Trans. Biomed. Eng., 2018

Predicting breast tumor proliferation from whole-slide images: the TUPAC16 challenge.
CoRR, 2018

Crowd disagreement of medical images is informative.
CoRR, 2018

Deformable image registration using convolutional neural networks.
Proceedings of the Medical Imaging 2018: Image Processing, 2018

Convolutional Neural Networks for Segmentation of the Left Atrium from Gadolinium-Enhancement MRI Images.
Proceedings of the Statistical Atlases and Computational Models of the Heart. Atrial Segmentation and LV Quantification Challenges, 2018

Crowd Disagreement About Medical Images Is Informative.
Proceedings of the Intravascular Imaging and Computer Assisted Stenting - and - Large-Scale Annotation of Biomedical Data and Expert Label Synthesis, 2018

Roto-Translation Covariant Convolutional Networks for Medical Image Analysis.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Inferring a third spatial dimension from 2D histological images.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Automatic classification of focal liver lesions based on clinical DCE-MR and T2-weighted images: A feasibility study.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

2017
Gland segmentation in colon histology images: The glas challenge contest.
Medical Image Anal., 2017

Isointense infant brain MRI segmentation with a dilated convolutional neural network.
CoRR, 2017

Automatic segmentation of the intracranialvolume in fetal MR images.
CoRR, 2017

Motion correction of dynamic contrast enhanced MRI of the liver.
Proceedings of the Medical Imaging 2017: Image Processing, 2017

Supervised local error estimation for nonlinear image registration using convolutional neural networks.
Proceedings of the Medical Imaging 2017: Image Processing, 2017

Adversarial Training and Dilated Convolutions for Brain MRI Segmentation.
Proceedings of the Deep Learning in Medical Image Analysis and Multimodal Learning for Clinical Decision Support, 2017

Domain-Adversarial Neural Networks to Address the Appearance Variability of Histopathology Images.
Proceedings of the Deep Learning in Medical Image Analysis and Multimodal Learning for Clinical Decision Support, 2017

Automatic Segmentation of the Intracranial Volume in Fetal MR Images.
Proceedings of the Fetal, Infant and Ophthalmic Medical Image Analysis, 2017

Exploring the Similarity of Medical Imaging Classification Problems.
Proceedings of the Intravascular Imaging and Computer Assisted Stenting, and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis, 2017

2016
Robust Retinal Vessel Segmentation via Locally Adaptive Derivative Frames in Orientation Scores.
IEEE Trans. Medical Imaging, 2016

A survey of medical image registration - under review.
Medical Image Anal., 2016

Cutting Out the Middleman: Measuring Nuclear Area in Histopathology Slides Without Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

The truth is hard to make: Validation of medical image registration.
Proceedings of the 23rd International Conference on Pattern Recognition, 2016

2015
Assessment of algorithms for mitosis detection in breast cancer histopathology images.
Medical Image Anal., 2015

Improving label fusion in multi-atlas based segmentation by locally combining atlas selection and performance estimation.
Comput. Vis. Image Underst., 2015

2014
Corrections to "Breast Cancer Histopathology Image Analysis: A Review".
IEEE Trans. Biomed. Eng., 2014

Breast Cancer Histopathology Image Analysis: A Review.
IEEE Trans. Biomed. Eng., 2014

DIRBoost-An algorithm for boosting deformable image registration: Application to lung CT intra-subject registration.
Medical Image Anal., 2014

Registration of organs with sliding interfaces and changing topologies.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

Fast Multiatlas Selection Using Composition of Transformations for Radiation Therapy Planning.
Proceedings of the Medical Computer Vision: Algorithms for Big Data, 2014

Image Registration.
Proceedings of the Bildverarbeitung für die Medizin 2014, Algorithmen - Systeme, 2014

2013
Free-form image registration regularized by a statistical shape model: application to organ segmentation in cervical MR.
Comput. Vis. Image Underst., 2013

Expert-driven label fusion in multi-atlas-based segmentation of the prostate using weighted atlases.
Int. J. Comput. Assist. Radiol. Surg., 2013

A patient specific 4D MRI liver motion model based on sparse imaging and registration.
Proceedings of the Medical Imaging 2013: Image-Guided Procedures, 2013

Detecting mitotic figures in breast cancer histopathology images.
Proceedings of the Medical Imaging 2013: Digital Pathology, 2013

Rib Detection in 3D MRI Using Dynamic Programming Based on Vesselness and Ridgeness.
Proceedings of the Abdominal Imaging. Computation and Clinical Applications, 2013

Segmentation of 3D Transesophageal Echocardiograms by Multi-cavity Active Shape Model and Gamma Mixture Model.
Proceedings of the Augmented Reality Environments for Medical Imaging and Computer-Assisted Interventions, 2013

Free-Form Registration Involving Disappearing Structures: Application to Brachytherapy MRI.
Proceedings of the Abdominal Imaging. Computation and Clinical Applications, 2013

Implicit surface registration with surface-oriented anisotropic deformation field smoothing.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Simultaneous pairwise registration for image mosaicing of TEE data.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

2012
Patient Specific Prostate Segmentation in 3-D Magnetic Resonance Images.
IEEE Trans. Medical Imaging, 2012

Supervised quality assessment of medical image registration: Application to intra-patient CT lung registration.
Medical Image Anal., 2012

On Combining Algorithms for Deformable Image Registration.
Proceedings of the Biomedical Image Registration - 5th International Workshop, 2012

Elastic Demons: Characterizing Cortical Development in Neonates Using an Implicit Surface Registration.
Proceedings of the Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data, 2012

Segmentation of the Cartilage in the Rib Cage in 3D MRI.
Proceedings of the Abdominal Imaging. Computational and Clinical Applications, 2012

DIRBoost: An algorithm for boosting deformable image registration.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

2011
Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge.
IEEE Trans. Medical Imaging, 2011

Editorial.
Medical Image Anal., 2011

Semi-automatic construction of reference standards for evaluation of image registration.
Medical Image Anal., 2011

Registration of multi-view 3D echocardiography images.
Proceedings of the Medical Image Understanding and Analysis, 2011

Supervised segmentation methods for the hippocampus in MR images.
Proceedings of the Medical Imaging 2011: Image Processing, 2011

Registration of multi-view apical 3D echocardiography images.
Proceedings of the Medical Imaging 2011: Image Processing, 2011

Evaluating and improving label fusion in atlas-based segmentation using the surface distance.
Proceedings of the Medical Imaging 2011: Image Processing, 2011

Evaluation of optimization methods for intensity-based 2D-3D registration in x-ray guided interventions.
Proceedings of the Medical Imaging 2011: Image Processing, 2011

Intra-temporal facial nerve centerline segmentation for navigated temporal bone surgery.
Proceedings of the Medical Imaging 2011: Visualization, 2011

Preconditioned Stochastic Gradient Descent Optimisation for Monomodal Image Registration.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Fast Automatic Multi-atlas Segmentation of the Prostate from 3D MR Images.
Proceedings of the Prostate Cancer Imaging. Image Analysis and Image-Guided Interventions, 2011

Segmentation of Cervical Images by Inter-subject Registration with a Statistical Organ Model.
Proceedings of the Abdominal Imaging. Computational and Clinical Applications, 2011

Marker-controlled watershed segmentation of nuclei in H&E stained breast cancer biopsy images.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Label fusion in multi-atlas based segmentation with user-defined local weights.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Local atlas selection and performance estimation in multi-atlas based segmentation.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Automatic Segmentation of the Prostate in 3D Magnetic Resonance Images Using Case Specific Deformable Models.
Proceedings of the 2011 International Conference on Digital Image Computing: Techniques and Applications (DICTA), 2011

2010
Automatic Segmentation of Pulmonary Lobes Robust Against Incomplete Fissures.
IEEE Trans. Medical Imaging, 2010

Label Fusion in Atlas-Based Segmentation Using a Selective and Iterative Method for Performance Level Estimation (SIMPLE).
IEEE Trans. Medical Imaging, 2010

elastix: A Toolbox for Intensity-Based Medical Image Registration.
IEEE Trans. Medical Imaging, 2010

Adaptive local multi-atlas segmentation: Application to the heart and the caudate nucleus.
Medical Image Anal., 2010

Automatic estimation of registration parameters: image similarity and regularization.
Proceedings of the Medical Imaging 2010: Image Processing, 2010

2009
Registration of Cervical MRI Using Multifeature Mutual Information.
IEEE Trans. Medical Imaging, 2009

Adaptive Stochastic Gradient Descent Optimisation for Image Registration.
Int. J. Comput. Vis., 2009

Automatic detection of registration errors for quality assessment in medical image registration.
Proceedings of the Medical Imaging 2009: Image Processing, 2009

Automatic Segmentation of the Pulmonary Lobes from Fissures, Airways, and Lung Borders: Evaluation of Robustness against Missing Data.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

Evaluation of 4D-CT Lung Registration.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

Optimal Discrete Multi-Resolution Deformable Image Registration.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Label Fusion Using Performance Estimation with Iterative Label Selection.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

2008
The Third International Workshop on Biomedical Image Registration - WBIR 2006.
Medical Image Anal., 2008

Semi-automatic Reference Standard Construction for Quantitative Evaluation of Lung CT Registration.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Enforcing stochastic inverse consistency in non-rigid image registration and matching.
Proceedings of the 2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2008), 2008

2007
Evaluation of Optimization Methods for Nonrigid Medical Image Registration Using Mutual Information and B-Splines.
IEEE Trans. Image Process., 2007

Projection-slice theorem based 2D-3D registration.
Proceedings of the Medical Imaging 2007: Image Processing, 2007

Segmentation of the Prostate in MR Images by Atlas Matching.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

2006
Normalized mutual information based registration using k-means clustering and shading correction.
Medical Image Anal., 2006

A Comparison of Acceleration Techniques for Nonrigid Medical Image Registration.
Proceedings of the Biomedical Image Registration, Third International Workshop, 2006

Nonrigid registration using a rigidity constraint.
Proceedings of the Medical Imaging 2006: Image Processing, 2006

2005
Nonrigid registration with adaptive content-based filtering of the deformation field.
Proceedings of the Medical Imaging 2005: Image Processing, 2005

Comparison of gradient approximation techniques for optimisation of mutual information in nonrigid registration.
Proceedings of the Medical Imaging 2005: Image Processing, 2005

2004
f-information measures in medical image registration.
IEEE Trans. Medical Imaging, 2004

Construction and evaluation of an average CT brain image for inter-subject registration.
Comput. Biol. Medicine, 2004

Registration Using Segment Intensity Remapping and Mutual Information.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

Ventricle Registration for Inter-subject White Matter Lesion Analysis.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

2003
Mutual Information Based Registration of Medical Images: A Survey.
IEEE Trans. Medical Imaging, 2003

Image Registration.
IEEE Trans. Medical Imaging, 2003

Normalized Mutual Information Based PET-MR Registration Using K-Means Clustering and Shading Correction.
Proceedings of the Biomedical Image Registration, Second International Workshop, 2003

Normalized mutual information-based registration using K-means clustering-based histogram binning.
Proceedings of the Medical Imaging 2003: Image Processing, 2003

Three-dimensional appearance for hippocampus segmentation from MRI.
Proceedings of the Medical Imaging 2003: Image Processing, 2003

2001
Mutual information matching in multiresolution contexts.
Image Vis. Comput., 2001

Two-Step Registration of Subacute to Hyperacute Stroke MRIs.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2001

2000
Image Registration by Maximization of Combined Mutual Information and Gradient Information.
IEEE Trans. Medical Imaging, 2000

Interpolation Artefacts in Mutual Information-Based Image Registration.
Comput. Vis. Image Underst., 2000

Image Registration by Maximization of Combined Mututal Information and Gradient Information.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2000

1999
Mutual information matching and interpolation artifacts.
Proceedings of the Medical Imaging 1999: Image Processing, 1999

Quantitative Comparison of Sinc-Approximating Kernels for Medical Image Interpolation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1999

1998
Multiscale approach to mutual information matching.
Proceedings of the Medical Imaging 1998: Image Processing, 1998

1995
Car license plate recognition with neural networks and fuzzy logic.
Proceedings of International Conference on Neural Networks (ICNN'95), Perth, WA, Australia, November 27, 1995


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