Joseph M. Plasek

According to our database, Joseph M. Plasek authored at least 26 papers between 2012 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Large language models for biomedicine: foundations, opportunities, challenges, and best practices.

Satya S. Sahoo, Joseph M. Plasek, Hua Xu, Özlem Uzuner, Trevor Cohen, Meliha Yetisgen, Hongfang Liu, Stéphane M. Meystre, Yanshan Wang

J. Am. Medical Informatics Assoc., 2024

High-dimensional multiple imputation (HDMI) for partially observed confounders including natural language processing-derived auxiliary covariates.

Janick Weberpals, Pamela A. Shaw, Kueiyu Joshua Lin, Richard Wyss, Joseph M. Plasek, Li Zhou, Kerry Ngan, Thomas DeRamus, Sudha R. Raman, Bradley G. Hammill, Hana Lee, Sengwee Toh, John G. Connolly, Kimberly J. Dandreo, Fang Tian, Wei Liu, Jie Li, José J. Hernández-Muñoz, Sebastian Schneeweiss, Rishi J. Desai

CoRR, 2024

2023

Characterizing terminology applied by authors and database producers to informatics literature on consumer engagement with wearable devices.

Kristine M. Alpi, Christie L. Martin, Joseph M. Plasek, Scott M. Sittig, Catherine Arnott Smith, Elizabeth Weinfurter, Jennifer K. Wells, Rachel Wong, Robin R. Austin

J. Am. Medical Informatics Assoc., June, 2023

Learning from undercoded clinical records for automated International Classification of Diseases (ICD) coding.

Yucheng Jin, Yun Xiong, Dan Shi, Yifei Lin, Lifang He, Yao Zhang, Joseph M. Plasek, Li Zhou, David W. Bates, Chunlei Tang

J. Am. Medical Informatics Assoc., February, 2023

2022

Using an optimized generative model to infer the progression of complications in type 2 diabetes patients.

Xiaoxia Wang, Yifei Lin, Yun Xiong, Suhua Zhang, Yanming He, Yuqing He, Zhikun Zhang, Joseph M. Plasek, Li Zhou, David W. Bates, Chunlei Tang

BMC Medical Informatics Decis. Mak., 2022

Using Twitter data to understand public perceptions of approved versus off-label use for COVID-19-related medications.

Yining Hua, Hang Jiang, Shixu Lin, Jie Yang, Joseph M. Plasek, David W. Bates, Li Zhou

J. Am. Medical Informatics Assoc., 2022

Sampling Adverse Drug Events in Outpatient Clinical Notes for Natural Language Processing Tasks.

Joseph M. Plasek, Abigail Salem, Stuart R. Lipsitz, Mary Amato, Dinah Foer, Heba Edrees, Suzanne V. Blackley, Brett R. South, Amol Rajmane, Mario Lorenzo, Paul Felt, Brendan Bull, Gretchen Purcell Jackson, Henry Feldman, David W. Bates, Li Zhou

Proceedings of the AMIA 2022, 2022

2021

Estimating Time to Progression of Chronic Obstructive Pulmonary Disease With Tolerance.

Chunlei Tang, Joseph M. Plasek, Xiao Shi, Meihan Wan, Haohan Zhang, Min-Jeoung Kang, Liqin Wang, Sevan M. Dulgarian, Yun Xiong, Jing Ma, David W. Bates, Li Zhou

IEEE J. Biomed. Health Informatics, 2021

Identifying and Reconciling Patients' Allergy Information Within the Electronic Health Record.

Sachin Vallamkonda, Carlos A. Ortega, Ying-Chih Lo, Suzanne V. Blackley, Liqin Wang, Diane L. Seger, Kimberly G. Blumenthal, Joseph M. Plasek, Foster R. Goss, Li Zhou

Proceedings of the MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation, 2021

Addressing Disparities in Diabetes Using Temporal Fairness Models.

Joseph M. Plasek, Chunlei Tang, Xiaoxia Wang, Yun Xiong, Yangyong Zhu, Yanming He, Patricia C. Dykes, David W. Bates, Li Zhou

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

Following data as it crosses borders during the COVID-19 pandemic.

Joseph M. Plasek, Chunlei Tang, Yangyong Zhu, Yajun Huang, David W. Bates

J. Am. Medical Informatics Assoc., 2020

2019

A temporal visualization of chronic obstructive pulmonary disease progression using deep learning and unstructured clinical notes.

Chunlei Tang, Joseph M. Plasek, Haohan Zhang, Min-Jeoung Kang, Haokai Sheng, Yun Xiong, David W. Bates, Li Zhou

BMC Medical Informatics Decis. Mak., 2019

Visualizing Literature Review Theme Evolution on Timeline Maps: Comparison Across Disciplines.

Chunlei Tang, Yangyong Zhu, Suzanne V. Blackley, Joseph M. Plasek, Meihan Wan, Li Zhou, Jing Ma, David W. Bates

IEEE Access, 2019

Data Reconstruction Based on Temporal Expressions in Clinical Notes.

Zhikun Zhang, Chunlei Tang, Joseph M. Plasek, Yun Xiong, Min-Jeoung Kang, Patricia C. Dykes, David W. Bates, Li Zhou

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

Harmonizing Oncology Data from Multiple Institutions with the Observational Medical Outcomes Partnership's Common Data Model.

Joseph M. Plasek, John Weissert, Kourosh Ravvaz

Proceedings of the AMIA 2019, 2019

2018

A value set for documenting adverse reactions in electronic health records.

Foster R. Goss, Kenneth H. Lai, Maxim Topaz, Warren W. Acker, Leigh Kowalski, Joseph M. Plasek, Kimberly G. Blumenthal, Diane L. Seger, Sarah P. Slight, Kin Wah Fung, Frank Y. Chang, David W. Bates, Li Zhou

J. Am. Medical Informatics Assoc., 2018

A Deep Learning Approach to Handling Temporal Variation in Chronic Obstructive Pulmonary Disease Progression.

Chunlei Tang, Joseph M. Plasek, Haohan Zhang, Yun Xiong, David W. Bates, Li Zhou

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

RegionAl: an Optimized Regional Classifier to Predict Mortality in Chronic Obstructive Pulmonary Disease Patients.

Haohan Zhang, Chunlei Tang, Joseph M. Plasek, Yun Xiong, Jing Ma, Li Zhou, David W. Bates

Proceedings of the AMIA 2018, 2018

Comparing Machine Learning Algorithms to Predict Falls of Community Dwelling Older Adults.

Rumei Yang, Joseph M. Plasek, Andrew Wilson, Mollie R. Cummins, Katherine A. Sward

Proceedings of the AMIA 2018, 2018

2017

Comment Topic Evolution on a Cancer Institution's Facebook Page.

Li Zhou, Joseph M. Plasek, Ronen Rozenblum, David W. Bates, Chunlei Tang

Appl. Clin. Inform., 2017

Solving Interoperability in Translational Health.

Anne M. Turner, Julio C. Facelli, Monique W. M. Jaspers, Thomas Wetter, Daniel Pfeifer, Laël Cranmer Gatewood, Terry Adam, Yu-Chuan Li, Ming-Chin Lin, R. Scott Evans, Anna L. Beukenhorst, Hugo Johan Theodoore van Mens, Esmée Tensen, Christian Bock, Laura Fendrich, Peter Seitz, Julian Suleder, Ranyah Aldekhyyel, Kent Bridgeman, Zhen Hu, Aaron Sattler, Shin-Yi Guo, Md. Mohaimenul Islam, Dina Nur Anggraini Ningrum, Hsin-Ru Tung, Jiantao Bian, Joseph M. Plasek, Casey A. Rommel, Juandalyn Burke, Harkirat Sohi

Appl. Clin. Inform., 2017

Content and Trends in Medical Informatics Publications over the Past Two Decades.

Liqin Wang, Maxim Topaz, Joseph M. Plasek, Li Zhou

Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

2016

Food entries in a large allergy data repository.

Joseph M. Plasek, Foster R. Goss, Kenneth H. Lai, Jason J. Lau, Diane L. Seger, Kimberly G. Blumenthal, Paige G. Wickner, Sarah P. Slight, Frank Y. Chang, Maxim Topaz, David W. Bates, Li Zhou

J. Am. Medical Informatics Assoc., 2016

2014

An Evaluation of a Natural Language Processing Tool for Identifying and Encoding Allergy Information in Emergency Department Clinical Notes.

Foster R. Goss, Joseph M. Plasek, Jason J. Lau, Diane L. Seger, Frank Y. Chang, Li Zhou

Proceedings of the AMIA 2014, 2014

2013

Evaluating standard terminologies for encoding allergy information.

Foster R. Goss, Li Zhou, Joseph M. Plasek, Carol A. Broverman, George A. Robinson, Blackford Middleton, Roberto A. Rocha

J. Am. Medical Informatics Assoc., 2013

2012

Mapping Partners Master Drug Dictionary to RxNorm using an NLP-based approach.

Li Zhou, Joseph M. Plasek, Lisa M. Mahoney, Frank Y. Chang, Dana DiMaggio, Roberto A. Rocha

J. Biomed. Informatics, 2012