Jose C. Nacher

According to our database, Jose C. Nacher authored at least 22 papers between 2004 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Determining cellular lineage directed networks in hematopoiesis using single-cell transcriptomic data and volatility-constrained correlation.

Tomoshiro Ochiai, Jose C. Nacher

Biosyst., 2024

2020

Measuring the Similarity of Proteomes using Grammar-based Compression via Domain Combinations.

Morihiro Hayashida, Hitoshi Koyano, Jose C. Nacher

Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2020), 2020

2019

Convolutional neural network approach to lung cancer classification integrating protein interaction network and gene expression profiles.

Teppei Matsubara, Tomoshiro Ochiai, Morihiro Hayashida, Tatsuya Akutsu, Jose C. Nacher

J. Bioinform. Comput. Biol., 2019

Artificial Neural Network Approach to Prediction of Protein-RNA Residue-base Contacts.

Morihiro Hayashida, Jose C. Nacher, Hitoshi Koyano

Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2019), 2019

2018

Analysis of Critical and Redundant Vertices in Controlling Directed Complex Networks Using Feedback Vertex Sets.

Yu Bao, Morihiro Hayashida, Pengyu Liu, Masayuki Ishitsuka, Jose C. Nacher, Tatsuya Akutsu

J. Comput. Biol., 2018

ncRNA-disease association prediction based on sequence information and tripartite network.

Takuya Mori, Hayliang Ngouv, Morihiro Hayashida, Tatsuya Akutsu, Jose C. Nacher

BMC Syst. Biol., 2018

2017

Analytical solution for the size of the minimum dominating set in complex networks.

Jose C. Nacher, Tomoshiro Ochiai

Int. J. Model. Simul. Sci. Comput., 2017

2016

Predicting link directionality in gene regulation from gene expression profiles using volatility-constrained correlation.

Tomoshiro Ochiai, Jose C. Nacher

Biosyst., 2016

2014

Analysis of critical and redundant nodes in controlling directed and undirected complex networks using dominating sets.

Jose C. Nacher, Tatsuya Akutsu

J. Complex Networks, 2014

2013

Community structure of non-coding RNA interaction network.

Jose C. Nacher

J. Integr. Bioinform., 2013

Analysis on critical nodes in controlling complex networks using dominating sets.

Jose C. Nacher, Tatsuya Akutsu

Proceedings of the Ninth International Conference on Signal-Image Technology & Internet-Based Systems, 2013

2012

Protein complex prediction via improved verification methods using constrained domain-domain matching.

Yang Zhao, Morihiro Hayashida, Jose C. Nacher, Hiroshi Nagamochi, Tatsuya Akutsu

Int. J. Bioinform. Res. Appl., 2012

Nonlinear response of gene expression to chemical perturbations: A noise-detector model and its predictions.

Jose C. Nacher, Vladimir B. Ryabov

Biosyst., 2012

2010

The role of internal duplication in the evolution of multi-domain proteins.

Jose C. Nacher, Morihiro Hayashida, Tatsuya Akutsu

Biosyst., 2010

Structural characterization and modeling of ncRNA-protein interactions.

Jose C. Nacher, N. Araki

Biosyst., 2010

2009

Emergence of scale-free distribution in protein-protein interaction networks based on random selection of interacting domain pairs.

Jose C. Nacher, Morihiro Hayashida, Tatsuya Akutsu

Biosyst., 2009

A Bipartite Graph Based Model of Protein Domain Networks.

Jose C. Nacher, Tomoshiro Ochiai, Morihiro Hayashida, Tatsuya Akutsu

Proceedings of the Complex Sciences, 2009

2008

Transcription and noise in negative feedback loops.

Jose C. Nacher, Tomoshiro Ochiai

Biosyst., 2008

2007

Topological aspects of protein networks.

Jose C. Nacher, Morihiro Hayashida, Tatsuya Akutsu

Proceedings of the Emergent Intelligence of Networked Agents, 2007

Correlation between structure and temperature in prokaryotic metabolic networks.

Kazuhiro Takemoto, Jose C. Nacher, Tatsuya Akutsu

BMC Bioinform., 2007

2006

Identification of metabolic units induced by environmental signals.

Jose C. Nacher, Jean-Marc Schwartz, Minoru Kanehisa, Tatsuya Akutsu

Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

2004

Clustering under the line graph transformation: application to reaction network.

Jose C. Nacher, Nobuhisa Ueda, Takuji Yamada, Minoru Kanehisa, Tatsuya Akutsu

BMC Bioinform., 2004