José C. M. Mombach

According to our database, José C. M. Mombach authored at least 18 papers between 2002 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

PTEN expression can be used as a switch between senescence and apoptosis in breast cancer cells according to a logical model of the G2/M checkpoint.

Yolanda M. B. Marcello, Daner Acunha Silveira, Shantanu Gupta, José Carlos Merino Mombach

Biosyst., January, 2024

Hypoxia-driven hybrid phenotypes in Ewing sarcoma: Insights from computational epithelial-mesenchymal transition modeling.

Daner Acunha Silveira, Shantanu Gupta, André T. Brunetto, José Carlos Merino Mombach, Marialva Sinigaglia

J. Comput. Sci., 2024

A differentiable programming framework for spin models.

Tiago de Souza Farias, Vitor Vaz Schultz, José C. M. Mombach, Jonas Maziero

Comput. Phys. Commun., 2024

2022

The Wnt pathway can stabilize hybrid phenotypes in the epithelial-mesenchymal transition: A logical modeling approach.

Daner Acunha Silveira, Shantanu Gupta, Marialva Sinigaglia, José Carlos Merino Mombach

Comput. Biol. Chem., 2022

2019

Towards the contribution of the p38MAPK pathway to the dual role of TGF<i>β</i> in cancer: A boolean model approach.

Veronica V. Rossato, Daner Acunha Silveira, Shantanu Gupta, José Carlos Merino Mombach

Comput. Biol. Medicine, 2019

2016

The R implementation of the CRAN package PATHChange, a tool to study genetic pathway alterations in transcriptomic data.

Carla A. R. S. Fontoura, Gastone C. Castellani, José C. M. Mombach

Comput. Biol. Medicine, 2016

2009

ViaComplex: software for landscape analysis of gene expression networks in genomic context.

Mauro A. A. Castro, José L. Rybarczyk Filho, Rodrigo J. S. Dalmolin, Marialva Sinigaglia, José C. F. Moreira, José C. M. Mombach, Rita M. C. de Almeida

Bioinform., 2009

An Ontology to Integrate Transcriptomics and Interatomics Data Involved in Gene Pathways of Genome Stability.

Giovani Rubert Librelotto, José Carlos Merino Mombach, Marialva Sinigaglia, Éder Simão, Heleno Borges Cabral, Mauro A. A. Castro

Proceedings of the Advances in Bioinformatics and Computational Biology, 2009

2007

Modelling, property verification and behavioural equivalence of lactose operon regulation.

Marcelo Cezar Pinto, Luciana Foss, José Carlos Merino Mombach, Leila Ribeiro

Comput. Biol. Medicine, 2007

2006

Bioinformatics analysis of mycoplasma metabolism: Important enzymes, metabolic similarities, and redundancy.

José C. M. Mombach, Ney Lemke, Norma M. da Silva, Rejane A. Ferreira, Eduardo Isaia, Cláudia K. Barcellos

Comput. Biol. Medicine, 2006

Computer simulation of the influence of cellular adhesion on the morphology of the interface between tissues of proliferating and quiescent cells.

Marcos A. Knewitz, José C. M. Mombach

Comput. Biol. Medicine, 2006

High Performance Simulations of the Cellular Potts Model.

Fernando Piccini Cercato, José C. M. Mombach, Gerson G. H. Cavalheiro

Proceedings of the 20th Annual International Symposium on High Performance Computing Systems and Applications (HPCS 2006), 2006

2005

An Efficient Parallel Algorithm to Evolve Simulations of the Cellular Potts Model.

Éder Gusatto, José C. M. Mombach, Fernando Piccini Cercato, Gerson G. H. Cavalheiro

Parallel Process. Lett., 2005

Modeling and Property Verification of Lactose Operon Regulation.

Marcelo Cezar Pinto, Luciana Foss, José C. M. Mombach, Leila Ribeiro

Proceedings of the Advances in Bioinformatics and Computational Biology, 2005

2004

Essentiality and damage in metabolic networks.

Ney Lemke, Fabiana Herédia, Cláudia K. Barcellos, Adriana Neves dos Reis, José C. M. Mombach

Bioinform., 2004

An Integrated Model for Cellular Analysis.

Eduardo Battistella, José Souza, Cláudia K. Barcellos, Ney Lemke, José C. M. Mombach

Proceedings of the III Brazilian Workshop on Bioinformatics, 2004

2003

A Method to Identify Essential Enzymes in the Metabolism: Application to Escherichia Coli.

Ney Lemke, Fabiana Herédia, Cláudia K. Barcellos, José C. M. Mombach

Proceedings of the Computational Methods in Systems Biology, First International Workshop, 2003

2002

Analysis of Functional Interactions of Enzymes in Mycoplasma pneumoniae.

Adriana Neves dos Reis, Cláudia K. Barcellos, Fabiana Herédia, Jean J. Schmith, José C. M. Mombach, Ney Lemke, Rejane A. Ferreira

Proceedings of the I Brazilian Workshop on Bioinformatics, 2002