Jorge Vieira

According to our database, Jorge Vieira authored at least 34 papers between 2003 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

SEDA 2024 update: enhancing the SEquence DAtaset builder for seamless integration into automated data analysis pipelines.

Miguel Reboiro-Jato, Daniel Pérez-Rodríguez, Miguel José Da Silva, David Vila-Fernández, Cristina P. Vieira, Jorge Vieira, Hugo López-Fernández

BMC Bioinform., December, 2024

Auto-phylo v2 and auto-phylo-pipeliner: building advanced, flexible, and reusable pipelines for phylogenetic inferences, estimation of variability levels and identification of positively selected amino acid sites.

Hugo López-Fernández, Miguel Pinto, Cristina P. Vieira, Pedro Duque, Miguel Reboiro-Jato, Jorge Vieira

J. Integr. Bioinform., 2024

Inferences on the evolution of the ascorbic acid synthesis pathway in insects using Phylogenetic Tree Collapser (PTC), a tool for the automated collapsing of phylogenetic trees using taxonomic information.

Daniel Glez-Peña, Hugo López-Fernández, Pedro Duque, Cristina P. Vieira, Jorge Vieira

J. Integr. Bioinform., 2024

Analytic pulse technique for computational electromagnetics.

Kale Weichman, Kyle G. Miller, B. Malaca, Warren B. Mori, J. R. Pierce, D. Ramsey, Jorge Vieira, Marija Vranic, John P. Palastro

Comput. Phys. Commun., 2024

2023

On the identification of potential novel therapeutic targets for spinocerebellar ataxia type 1 (SCA1) neurodegenerative disease using EvoPPI3.

André D. Sousa, Sara Rocha, Jorge Vieira, Miguel Reboiro-Jato, Hugo López-Fernández, Cristina P. Vieira

J. Integr. Bioinform., July, 2023

RaDiO: An efficient spatiotemporal radiation diagnostic for particle-in-cell codes.

Miguel L. Pardal, A. Sainte-Marie, A. Reboul-Salze, Ricardo A. Fonseca, Jorge Vieira

Comput. Phys. Commun., April, 2023

Auto-phylo: A Pipeline Maker for Phylogenetic Studies.

Hugo López-Fernández, Miguel Pinto, Cristina P. Vieira, Pedro Duque, Miguel Reboiro-Jato, Jorge Vieira

Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2023

2022

SEDA: A Desktop Tool Suite for FASTA Files Processing.

Hugo López-Fernández, Pedro Duque, Noé Vázquez, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Twisted Waves near a Plasma Cutoff.

José Tito Mendonça, Camilla Willim, Jorge Vieira

Symmetry, 2022

The AWAKE Run 2 Programme and Beyond.

Edda Gschwendtner, Konstantin Lotov, Patric Muggli, Matthew Wing, Riccardo Agnello, Claudia Christina Ahdida, Maria Carolina Amoedo Goncalves, Yanis Andrebe, Oznur Apsimon, Robert Apsimon, Jordan Matias Arnesano, Anna-Maria Bachmann, Diego Barrientos, Fabian Batsch, Vittorio Bencini, Michele Bergamaschi, Patrick Blanchard, Philip Nicholas Burrows, Birger Buttenschön, Allen Caldwell, James Chappell, Eric Chevallay, Moses Chung, David Andrew Cooke, Heiko Damerau, Can Davut, Gábor Demeter, Amos Christopher Dexter, Steffen Doebert, Francesa Ann Elverson, John Farmer, Ambrogio Fasoli, Valentin Fedosseev, Ricardo Fonseca, Ivo Furno, Spencer Gessner, Aleksandr Gorn, Eduardo Granados, Marcel Granetzny, Tim Graubner, Olaf Grulke, Eloise Daria Guran, Vasyl Hafych, Anthony Hartin, James Henderson, Mathias Hüther, Miklos Kedves, Fearghus Keeble, Vadim Khudiakov, Seong-Yeol Kim, Florian Kraus, Michel Krupa, Thibaut Lefevre, Linbo Liang, Shengli Liu, Nelson Lopes, Miguel Martinez Calderon, Stefano Mazzoni, David Medina Godoy, Joshua Moody, Kookjin Moon, Pablo Israel Morales Guzmán, Mariana Moreira, Tatiana Nechaeva, Elzbieta Nowak, Collette Pakuza, Harsha Panuganti, Ans Pardons, Kevin Pepitone, Aravinda Perera, Jan Pucek, Alexander Pukhov, Rebecca Louise Ramjiawan, Stephane Rey, Adam Scaachi, Oliver Schmitz, Eugenio Senes, J. Fernando A. da Silva, Luis Silva, Christine Stollberg, Alban Sublet, Catherine Swain, Athanasios Topaloudis, Nuno Torrado, Petr Tuev, Marlene Turner, Francesco Velotti, Livio Verra, Victor Verzilov, Jorge Vieira, Helmut Vincke, Martin Weidl, Carsten P. Welsch, Manfred Wendt, Peerawan Wiwattananon, Joseph Wolfenden, Benjamin Woolley, Samuel Wyler, Guoxing Xia, Vlada Yarygova, Michael Zepp, Giovanni Zevi Della Porta

Symmetry, 2022

EvoPPI 2: A Web and Local Platform for the Comparison of Protein-Protein Interaction Data from Multiple Sources from the Same and Distinct Species.

Miguel Reboiro-Jato, Jorge Vieira, Sara Rocha, André D. Sousa, Hugo López-Fernández, Cristina P. Vieira

Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2022

2021

The pegi3s Bioinformatics Docker Images Project.

Hugo López-Fernández, Pedro Ferreira, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira

Proceedings of the Practical Applications of Computational Biology & Bioinformatics, 2021

2020

Inferences on Mycobacterium Leprae Host Immune Response Escape and Antibiotic Resistance Using Genomic Data and GenomeFastScreen.

Hugo López-Fernández, Cristina P. Vieira, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Jorge Vieira

Proceedings of the Practical Applications of Computational Biology & Bioinformatics, 2020

2019

Inferring Positive Selection in Large Viral Datasets.

Hugo López-Fernández, Pedro Duque, Noé Vázquez, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira

Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2019

2018

EvoPPI: A Web Application to Compare Protein-Protein Interactions (PPIs) from Different Databases and Species.

Noé Vázquez, Sara Rocha, Hugo López-Fernández, André Torres, Rui Camacho, Florentino Fdez-Riverola, Jorge Vieira, Cristina P. Vieira, Miguel Reboiro-Jato

Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2018

A Bioinformatics Protocol for Quickly Creating Large-Scale Phylogenetic Trees.

Hugo López-Fernández, Pedro Duque, Sílvia Henriques, Noé Vázquez, Florentino Fdez-Riverola, Cristina P. Vieira, Miguel Reboiro-Jato, Jorge Vieira

Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2018

2017

Automated Collection and Sharing of Adaptive Amino Acid Changes Data.

Noé Vázquez, Cristina P. Vieira, Bárbara S. R. Amorim, André Torres, Hugo López-Fernández, Florentino Fdez-Riverola, José L. R. Sousa, Miguel Reboiro-Jato, Jorge Vieira

Proceedings of the 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2017

2016

Enabling Lorentz boosted frame particle-in-cell simulations of laser wakefield acceleration in quasi-3D geometry.

Peicheng Yu, Xinlu Xu, Asher Davidson, Adam Tableman, Thamine Dalichaouch, Fei Li, Michael D. Meyers, Weiming An, Frank S. Tsung, Viktor K. Decyk, Frederico Fiuza, Jorge Vieira, Ricardo A. Fonseca, Wei Lu, Luís O. Silva, Warren B. Mori

J. Comput. Phys., 2016

2015

Implementation of a hybrid particle code with a PIC description in r-z and a gridless description in ϕ into OSIRIS.

Adam Davidson, Adam Tableman, Weiming An, Frank S. Tsung, Wei Lu, Jorge Vieira, Ricardo A. Fonseca, Luís O. Silva, Warren B. Mori

J. Comput. Phys., 2015

Mitigation of numerical Cerenkov radiation and instability using a hybrid finite difference-FFT Maxwell solver and a local charge conserving current deposit.

Peicheng Yu, Xinlu Xu, Adam Tableman, Viktor K. Decyk, Frank S. Tsung, Frederico Fiuza, Asher Davidson, Jorge Vieira, Ricardo A. Fonseca, Wei Lu, Luís O. Silva, Warren B. Mori

Comput. Phys. Commun., 2015

Elimination of the numerical Cerenkov instability for spectral EM-PIC codes.

Peicheng Yu, Xinlu Xu, Viktor K. Decyk, Frederico Fiuza, Jorge Vieira, Frank S. Tsung, Ricardo A. Fonseca, Wei Lu, Luís O. Silva, Warren B. Mori

Comput. Phys. Commun., 2015

Demonstration of GIS web-based platform for experimentation supported by geosensors in a WSN.

Alexandra Ribeiro, Jorge Vieira, Vitor Sousa, Alberto Cardoso

Proceedings of the 2015 3rd Experiment International Conference (exp.at'15), 2015

2014

Modeling of laser wakefield acceleration in Lorentz boosted frame using EM-PIC code with spectral solver.

Peicheng Yu, Xinlu Xu, Viktor K. Decyk, Weiming An, Jorge Vieira, Frank S. Tsung, Ricardo A. Fonseca, Wei Lu, Luís O. Silva, Warren B. Mori

J. Comput. Phys., 2014

2013

Improving the performance of Transposable Elements detection tools.

Tiago Loureiro, Rui Camacho, Jorge Vieira, Nuno A. Fonseca

J. Integr. Bioinform., 2013

Numerical instability due to relativistic plasma drift in EM-PIC simulations.

Xinlu Xu, Peicheng Yu, Samuel F. Martins, Frank S. Tsung, Viktor K. Decyk, Jorge Vieira, Ricardo A. Fonseca, Wei Lu, Luís O. Silva, Warren B. Mori

Comput. Phys. Commun., 2013

Boosting the Detection of Transposable Elements Using Machine Learning.

Tiago Loureiro, Rui Camacho, Jorge Vieira, Nuno A. Fonseca

Proceedings of the 7th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2013

2012

ADOPS - Automatic Detection Of Positively Selected Sites.

David Reboiro-Jato, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Cristina P. Vieira, Nuno A. Fonseca, Jorge Vieira

J. Integr. Bioinform., 2012

On the Development of a Pipeline for the Automatic Detection of Positively Selected Sites.

David Reboiro-Jato, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Nuno A. Fonseca, Jorge Vieira

Proceedings of the 6th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2012

2009

Partitional Clustering of Protein Sequences - An Inductive Logic Programming Approach.

Nuno A. Fonseca, Vítor Santos Costa, Rui Camacho, Cristina P. Vieira, Jorge Vieira

Proceedings of the Distributed Computing, 2009

2008

Efficient Data Distribution for DWS.

Raquel Almeida, Jorge Vieira, Marco Vieira, Henrique Madeira, Jorge Bernardino

Proceedings of the Data Warehousing and Knowledge Discovery, 10th International Conference, 2008

RAIN: Always on Data Warehousing.

Jorge Vieira, Marco Vieira, Marco Costa, Henrique Madeira

Proceedings of the Database Systems for Advanced Applications, 2008

Redundant Array of Inexpensive Nodes for DWS.

Jorge Vieira, Marco Vieira, Marco Costa, Henrique Madeira

Proceedings of the Database Systems for Advanced Applications, 2008

2005

Efficient Compression of Text Attributes of Data Warehouse Dimensions.

Jorge Vieira, Jorge Bernardino, Henrique Madeira

Proceedings of the Data Warehousing and Knowledge Discovery, 2005

2003

A middle layer for distributed data warehouses using the DWS-AQA technique.

Marco Costa, Jorge Vieira, Jorge Bernardino, Pedro Furtado, Henrique Madeira

Proceedings of the VIII Jornadas Ingeniería del Software y Bases de Datos (JISBD 2003), 2003