Jorge González-Domínguez

Orcid: 0000-0002-2602-4874

According to our database1, Jorge González-Domínguez authored at least 60 papers between 2009 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
PARamrfinder: detecting allele-specific DNA methylation on multicore clusters.
J. Supercomput., July, 2024

bioScience: A new python science library for high-performance computing bioinformatics analytics.
SoftwareX, 2024

CUDA acceleration of MI-based feature selection methods.
J. Parallel Distributed Comput., 2024

BigDEC: A multi-algorithm Big Data tool based on the k-mer spectrum method for scalable short-read error correction.
Future Gener. Comput. Syst., 2024

Applying dynamic balancing to improve the performance of MPI parallel genomics applications.
Proceedings of the 39th ACM/SIGAPP Symposium on Applied Computing, 2024

2023
PATO: genome-wide prediction of lncRNA-DNA triple helices.
Bioinform., March, 2023

ParRADMeth: Identification of Differentially Methylated Regions on Multicore Clusters.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

pRIblast: A highly efficient parallel application for comprehensive lncRNA-RNA interaction prediction.
Future Gener. Comput. Syst., 2023

Parallel construction of RNA databases for extensive lncRNA-RNA interaction prediction.
Proceedings of the 38th ACM/SIGAPP Symposium on Applied Computing, 2023

2022
Fiuncho: a program for any-order epistasis detection in CPU clusters.
J. Supercomput., 2022

MPI-dot2dot: A parallel tool to find DNA tandem repeats on multicore clusters.
J. Supercomput., 2022

Evaluation of Existing Methods for High-Order Epistasis Detection.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Parallel-FST: A feature selection library for multicore clusters.
J. Parallel Distributed Comput., 2022

A SIMD algorithm for the detection of epistatic interactions of any order.
Future Gener. Comput. Syst., 2022

PyToxo: a Python tool for calculating penetrance tables of high-order epistasis models.
BMC Bioinform., 2022

Generating penetrance tables of high-order epistasis models with PyToxo.
Proceedings of V XoveTIC Conference, 2022

2021
ScalaParBiBit: scaling the binary biclustering in distributed-memory systems.
Clust. Comput., 2021

2020
Fast search of third-order epistatic interactions on CPU and GPU clusters.
Int. J. High Perform. Comput. Appl., 2020

CUDA-JMI: Acceleration of feature selection on heterogeneous systems.
Future Gener. Comput. Syst., 2020

SMusket: Spark-based DNA error correction on distributed-memory systems.
Future Gener. Comput. Syst., 2020

Toxo: a library for calculating penetrance tables of high-order epistasis models.
BMC Bioinform., 2020

SeQual: Big Data Tool to Perform Quality Control and Data Preprocessing of Large NGS Datasets.
IEEE Access, 2020

2019
Parallel feature selection for distributed-memory clusters.
Inf. Sci., 2019

Accelerating binary biclustering on platforms with CUDA-enabled GPUs.
Inf. Sci., 2019

Analysis of the Construction of Similarity Matrices on Multi-core and Many-Core Platforms Using Different Similarity Metrics.
Proceedings of the Computational Science - ICCS 2019, 2019

2018
MPIGeneNet: Parallel Calculation of Gene Co-Expression Networks on Multicore Clusters.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

parSRA: A framework for the parallel execution of short read aligners on compute clusters.
J. Comput. Sci., 2018

2017
Parallel definition of tear film maps on distributed-memory clusters for the support of dry eye diagnosis.
Comput. Methods Programs Biomed., 2017

Speed and accuracy improvement of higher-order epistasis detection on CUDA-enabled GPUs.
Clust. Comput., 2017

MarDRe: efficient MapReduce-based removal of duplicate DNA reads in the cloud.
Bioinform., 2017

Evaluation of OpenMP SIMD Directives on Xeon Phi Coprocessors.
Proceedings of the 2017 International Conference on High Performance Computing & Simulation, 2017

Fast Parallel Construction of Correlation Similarity Matrices for Gene Co-Expression Networks on Multicore Clusters.
Proceedings of the International Conference on Computational Science, 2017

2016
Parallel Pairwise Epistasis Detection on Heterogeneous Computing Architectures.
IEEE Trans. Parallel Distributed Syst., 2016

Multithreaded and Spark parallelization of feature selection filters.
J. Comput. Sci., 2016

MSAProbs-MPI: parallel multiple sequence aligner for distributed-memory systems.
Bioinform., 2016

ParDRe: faster parallel duplicated reads removal tool for sequencing studies.
Bioinform., 2016

Acceleration of Tear Film Map Definition on Multicore Systems.
Proceedings of the International Conference on Computational Science 2016, 2016

Ultra-Fast Detection of Higher-Order Epistatic Interactions on GPUs.
Proceedings of the Euro-Par 2016: Parallel Processing Workshops, 2016

Combining GPU and FPGA technology for efficient exhaustive interaction analysis in GWAS.
Proceedings of the 27th IEEE International Conference on Application-specific Systems, 2016

2015
Parallelizing Epistasis Detection in GWAS on FPGA and GPU-Accelerated Computing Systems.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015

High-speed exhaustive 3-locus interaction epistasis analysis on FPGAs.
J. Comput. Sci., 2015

GPU-accelerated exhaustive search for third-order epistatic interactions in case-control studies.
J. Comput. Sci., 2015

Large-scale genome-wide association studies on a GPU cluster using a CUDA-accelerated PGAS programming model.
Int. J. High Perform. Comput. Appl., 2015

2014
A 2D algorithm with asymmetric workload for the UPC conjugate gradient method.
J. Supercomput., 2014

Constructing Performance Models for Dense Linear Algebra Algorithms on Cray XE Systems.
CoRR, 2014

Scalable PGAS collective operations in NUMA clusters.
Clust. Comput., 2014

Analyzing the Energy Efficiency of the Memory Subsystem in Multicore Processors.
Proceedings of the IEEE International Symposium on Parallel and Distributed Processing with Applications, 2014

FPGA-based Acceleration of Detecting Statistical Epistasis in GWAS.
Proceedings of the International Conference on Computational Science, 2014

Hybrid CPU/GPU Acceleration of Detection of 2-SNP Epistatic Interactions in GWAS.
Proceedings of the Euro-Par 2014 Parallel Processing, 2014

UPC++ for bioinformatics: A case study using genome-wide association studies.
Proceedings of the 2014 IEEE International Conference on Cluster Computing, 2014

2013
Performance evaluation of sparse matrix products in UPC.
J. Supercomput., 2013

Analysis of I/O Performance on an Amazon EC2 Cluster Compute and High I/O Platform.
J. Grid Comput., 2013

The Servet 3.0 benchmark suite: Characterization of network performance degradation.
Comput. Electr. Eng., 2013

2012
UPCBLAS: a library for parallel matrix computations in Unified Parallel C.
Concurr. Comput. Pract. Exp., 2012

Automatic mapping of parallel applications on multicore architectures using the Servet benchmark suite.
Comput. Electr. Eng., 2012

Communication avoiding and overlapping for numerical linear algebra.
Proceedings of the SC Conference on High Performance Computing Networking, 2012

Design and Performance Issues of Cholesky and LU Solvers Using UPCBLAS.
Proceedings of the 10th IEEE International Symposium on Parallel and Distributed Processing with Applications, 2012

2011
Dense Triangular Solvers on Multicore Clusters using UPC.
Proceedings of the International Conference on Computational Science, 2011

2010
Servet: A benchmark suite for autotuning on multicore clusters.
Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010

2009
A Parallel Numerical Library for UPC.
Proceedings of the Euro-Par 2009 Parallel Processing, 2009


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