Jonathan W. Berry

According to our database, Jonathan W. Berry authored at least 48 papers between 1995 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Optimal accuracy for linear sets of equations with the graph Laplacian.

Richard B. Lehoucq, Michael Weylandt, Jonathan W. Berry

CoRR, 2024

2022

A Block-Based Triangle Counting Algorithm on Heterogeneous Environments.

Abdurrahman Yasar, Sivasankaran Rajamanickam, Jonathan W. Berry, Ümit V. Çatalyürek

IEEE Trans. Parallel Distributed Syst., 2022

PGAbB: A Block-Based Graph Processing Framework for Heterogeneous Platforms.

Abdurrahman Yasar, Sivasankaran Rajamanickam, Jonathan W. Berry, Ümit V. Çatalyürek

CoRR, 2022

Automatic HBM Management: Models and Algorithms.

Daniel DeLayo, Kenny Zhang, Kunal Agrawal, Michael A. Bender, Jonathan W. Berry, Rathish Das, Benjamin Moseley, Cynthia A. Phillips

Proceedings of the SPAA '22: 34th ACM Symposium on Parallelism in Algorithms and Architectures, Philadelphia, PA, USA, July 11, 2022

2021

Timely Reporting of Heavy Hitters Using External Memory.

Shikha Singh, Prashant Pandey, Michael A. Bender, Jonathan W. Berry, Martin Farach-Colton, Rob Johnson, Thomas M. Kroeger, Cynthia A. Phillips

ACM Trans. Database Syst., 2021

Connected Components for Infinite Graph Streams: Theory and Practice.

Jonathan W. Berry, Cynthia A. Phillips, Alexandra M. Porter

CoRR, 2021

Performance Portability of an SpMV Kernel Across Scientific Computing and Data Science Applications.

Stephen L. Olivier, Nathan D. Ellingwood, Jonathan W. Berry, Daniel M. Dunlavy

Proceedings of the 2021 IEEE High Performance Extreme Computing Conference, 2021

2020

A Deterministic Hitting-Time Moment Approach to Seed-set Expansion over a Graph.

Alexander H. Foss, Richard B. Lehoucq, W. Zachary Stuart, J. Derek Tucker, Jonathan W. Berry

CoRR, 2020

How to Manage High-Bandwidth Memory Automatically.

Rathish Das, Kunal Agrawal, Michael A. Bender, Jonathan W. Berry, Benjamin Moseley, Cynthia A. Phillips

Proceedings of the SPAA '20: 32nd ACM Symposium on Parallelism in Algorithms and Architectures, 2020

2019

Making social networks more human: A topological approach.

Jonathan W. Berry, Cynthia A. Phillips, Jared Saia

Stat. Anal. Data Min., 2019

Scalable generation of graphs for benchmarking HPC community-detection algorithms.

George M. Slota, Jonathan W. Berry, Simon D. Hammond, Stephen L. Olivier, Cynthia A. Phillips, Sivasankaran Rajamanickam

Proceedings of the International Conference for High Performance Computing, 2019

Linear Algebra-Based Triangle Counting via Fine-Grained Tasking on Heterogeneous Environments : (Update on Static Graph Challenge).

Abdurrahman Yasar, Sivasankaran Rajamanickam, Jonathan W. Berry, Michael M. Wolf, Jeffrey S. Young, Ümit V. Çatalyürek

Proceedings of the 2019 IEEE High Performance Extreme Computing Conference, 2019

2018

The Online Event-Detection Problem.

Michael A. Bender, Jonathan W. Berry, Martin Farach-Colton, Rob Johnson, Thomas M. Kroeger, Prashant Pandey, Cynthia A. Phillips, Shikha Singh

CoRR, 2018

Optimizing for KNL Usage Modes When Data Doesn't Fit in MCDRAM.

Neil Butcher, Stephen L. Olivier, Jonathan W. Berry, Simon D. Hammond, Peter M. Kogge

Proceedings of the 47th International Conference on Parallel Processing, 2018

Fast Triangle Counting Using Cilk.

Abdurrahman Yasar, Sivasankaran Rajamanickam, Michael M. Wolf, Jonathan W. Berry, Ümit V. Çatalyürek

Proceedings of the 2018 IEEE High Performance Extreme Computing Conference, 2018

2017

Two-level main memory co-design: Multi-threaded algorithmic primitives, analysis, and simulation.

Michael A. Bender, Jonathan W. Berry, Simon D. Hammond, K. Scott Hemmert, Samuel McCauley, Branden Moore, Benjamin Moseley, Cynthia A. Phillips, David S. Resnick, Arun Rodrigues

J. Parallel Distributed Comput., 2017

Fast linear algebra-based triangle counting with KokkosKernels.

Michael M. Wolf, Mehmet Deveci, Jonathan W. Berry, Simon D. Hammond, Sivasankaran Rajamanickam

Proceedings of the 2017 IEEE High Performance Extreme Computing Conference, 2017

2016

Anti-Persistence on Persistent Storage: History-Independent Sparse Tables and Dictionaries.

Michael A. Bender, Jonathan W. Berry, Rob Johnson, Thomas M. Kroeger, Samuel McCauley, Cynthia A. Phillips, Bertrand Simon, Shikha Singh, David Zage

Proceedings of the 35th ACM SIGMOD-SIGACT-SIGAI Symposium on Principles of Database Systems, 2016

2015

Why Do Simple Algorithms for Triangle Enumeration Work in the Real World?

Jonathan W. Berry, Luke A. Fostvedt, Daniel J. Nordman, Cynthia A. Phillips, C. Seshadhri, Alyson G. Wilson

Internet Math., 2015

k-Means Clustering on Two-Level Memory Systems.

Michael A. Bender, Jonathan W. Berry, Simon D. Hammond, Branden Moore, Benjamin Moseley, Cynthia A. Phillips

Proceedings of the 2015 International Symposium on Memory Systems, 2015

Cooperative Computing for Autonomous Data Centers.

Jonathan W. Berry, Michael J. Collins, Aaron Kearns, Cynthia A. Phillips, Jared Saia, Randy Smith

Proceedings of the 2015 IEEE International Parallel and Distributed Processing Symposium, 2015

A task-based linear algebra Building Blocks approach for scalable graph analytics.

Michael M. Wolf, Jonathan W. Berry, Dylan T. Stark

Proceedings of the 2015 IEEE High Performance Extreme Computing Conference, 2015

2013

Maintaining connected components for infinite graph streams.

Jonathan W. Berry, Matthew Oster, Cynthia A. Phillips, Steven J. Plimpton, Timothy M. Shead

Proceedings of the 2nd International Workshop on Big Data, 2013

Standards for graph algorithm primitives.

Tim Mattson, David A. Bader, Jonathan W. Berry, Aydin Buluç, Jack J. Dongarra, Christos Faloutsos, John Feo, John R. Gilbert, Joseph Gonzalez, Bruce Hendrickson, Jeremy Kepner, Charles E. Leiserson, Andrew Lumsdaine, David A. Padua, Stephen Poole, Steven P. Reinhardt, Mike Stonebraker, Steve Wallach, Andrew Yoo

Proceedings of the IEEE High Performance Extreme Computing Conference, 2013

2011

Challenges in streaming graph analysis.

Jonathan W. Berry, Matthew Oster, Cynthia A. Phillips, Steven J. Plimpton

Proceedings of the MILCOM 2011, 2011

2009

US Environmental Protection Agency Uses Operations Research to Reduce Contamination Risks in Drinking Water.

Regan Murray, William E. Hart, Cynthia A. Phillips, Jonathan W. Berry, Erik G. Boman, Robert D. Carr, Lee Ann Riesen, Jean-Paul Watson, Terra Haxton, Jonathan G. Herrmann, Robert Janke, George Gray, Thomas Taxon, James G. Uber, Kevin M. Morley

Interfaces, 2009

Implementing a portable Multi-threaded Graph Library: The MTGL on Qthreads.

Brian W. Barrett, Jonathan W. Berry, Richard C. Murphy, Kyle B. Wheeler

Proceedings of the 23rd IEEE International Symposium on Parallel and Distributed Processing, 2009

2008

Graph Analysis with High-Performance Computing.

Bruce Hendrickson, Jonathan W. Berry

Comput. Sci. Eng., 2008

2007

Challenges in Parallel Graph Processing.

Andrew Lumsdaine, Douglas P. Gregor, Bruce Hendrickson, Jonathan W. Berry

Parallel Process. Lett., 2007

Limited-Memory Techniques for Sensor Placement in Water Distribution Networks.

William E. Hart, Jonathan W. Berry, Erik G. Boman, Cynthia A. Phillips, Lee Ann Riesen, Jean-Paul Watson

Proceedings of the Learning and Intelligent Optimization, Second International Conference, 2007

Analyzing the Scalability of Graph Algorithms on Eldorado.

Keith D. Underwood, Megan Vance, Jonathan W. Berry, Bruce Hendrickson

Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

Advanced Shortest Paths Algorithms on a Massively-Multithreaded Architecture.

Joseph R. Crobak, Jonathan W. Berry, Kamesh Madduri, David A. Bader

Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

Software and Algorithms for Graph Queries on Multithreaded Architectures.

Jonathan W. Berry, Bruce Hendrickson, Simon Kahan, Petr Konecny

Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

EXACT: the experimental algorithmics computational toolkit.

William E. Hart, Jonathan W. Berry, Robert T. Heaphy, Cynthia A. Phillips

Proceedings of the Workshop on Experimental Computer Science, 2007

An Experimental Study of A Parallel Shortest Path Algorithm for Solving Large-Scale Graph Instances.

Kamesh Madduri, David A. Bader, Jonathan W. Berry, Joseph R. Crobak

Proceedings of the Nine Workshop on Algorithm Engineering and Experiments, 2007

2006

DFS: A Simple to Write Yet Difficult to Execute Benchmark.

Richard C. Murphy, Jonathan W. Berry, William McLendon, Bruce Hendrickson, Douglas P. Gregor, Andrew Lumsdaine

Proceedings of the 2006 IEEE International Symposium on Workload Characterization, 2006

Parallel Shortest Path Algorithms for Solving Large-Scale Instances.

Kamesh Madduri, David A. Bader, Jonathan W. Berry, Joseph R. Crobak

Proceedings of the Shortest Path Problem, 2006

Realizing parallelism in database operations: insights from a massively multithreaded architecture.

John Cieslewicz, Jonathan W. Berry, Bruce Hendrickson, Kenneth A. Ross

Proceedings of the Workshop on Data Management on New Hardware, 2006

2005

Finding Median Set of Tree Structures in Synchronous Distributed Systems.

Jonathan W. Berry, Daniel Hrozencik, Shrisha Rao, Zhizhang Shen

Proceedings of the 20th International Conference on Computers and Their Applications, 2005

2004

Scheduling an Industrial Production Facility.

Eyjolfur Ingi Asgeirsson, Jonathan W. Berry, Cynthia A. Phillips, David J. Phillips, Clifford Stein, Joel Wein

Proceedings of the Integer Programming and Combinatorial Optimization, 2004

Finding Central Sets of Tree Structures in Synchronous Distributed Systems.

Jonathan W. Berry, Daniel Hrozencik, Shrisha Rao, Zhizhang Shen

Proceedings of the ISCA 17th International Conference on Parallel and Distributed Computing Systems, 2004

2001

Considerations for Future Designers of General Purpose Graph Software.

Jonathan W. Berry

Proceedings of the Graphs and Discovery, 2001

2000

LINK: a system for graph computation.

Jonathan W. Berry, Nathaniel Dean, Mark K. Goldberg, Gregory E. Shannon, Steven Skiena

Softw. Pract. Exp., 2000

1999

Path Optimization for Graph Partitioning Problems.

Jonathan W. Berry, Mark K. Goldberg

Discret. Appl. Math., 1999

1997

LINK: a software package for discrete mathematics and algorithms (demonstration).

Jonathan W. Berry

Proceedings of the supplemental proceedings of the conference on Integrating technology into computer science education: working group reports and supplemental proceedings, 1997

Improving discrete mathematics and algorithms curricula with LINK.

Jonathan W. Berry

Proceedings of the 2nd Annual Conference on Integrating Technology into Computer Science Education, 1997

Graph Drawing and Manipulation with <i>LINK</i>.

Jonathan W. Berry, Nathaniel Dean, Mark K. Goldberg, Gregory E. Shannon, Steven Skiena

Proceedings of the Graph Drawing, 5th International Symposium, 1997

1995

Path Optimization and Near-Greedy Analysis for Graph Partitioning: An Empirical Study.

Jonathan W. Berry, Mark K. Goldberg

Proceedings of the Sixth Annual ACM-SIAM Symposium on Discrete Algorithms, 1995