Jonathan Schug

According to our database, Jonathan Schug authored at least 14 papers between 1997 and 2018.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2018

Defiant: (DMRs: easy, fast, identification and ANnoTation) identifies differentially Methylated regions from iron-deficient rat hippocampus.

David E. Condon, Phu V. Tran, Yu-Chin Lien, Jonathan Schug, Michael K. Georgieff, Rebecca A. Simmons, Kyoung-Jae Won

BMC Bioinform., 2018

2011

Tissue-specific regulation of mouse MicroRNA genes in endoderm-derived tissues.

Yan Gao, Jonathan Schug, Lindsay B. McKenna, John Le Lay, Klaus H. Kaestner, Linda E. Greenbaum

Nucleic Acids Res., 2011

Mitochondrial Genome Sequence Analysis: A custom bioinformatics pipeline substantially improves Affymetrix MitoChip v2.0 call rate and accuracy.

Hongbo M. Xie, Juan C. Perin, Theodore G. Schurr, Matthew C. Dulik, Sergey I. Zhadanov, Joseph A. Baur, Michael P. King, Emily Place, Colleen Clarke, Michael Grauer, Jonathan Schug, Avni Santani, Anthony Albano, Cecilia Kim, Vincent Procaccio, Hakon Hakonarson, Xiaowu Gai, Marni J. Falk

BMC Bioinform., 2011

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).

Gregory R. Grant, Michael H. Farkas, Angel D. Pizarro, Nicholas F. Lahens, Jonathan Schug, Brian P. Brunk, Christian J. Stoeckert Jr., John B. Hogenesch, Eric A. Pierce

Bioinform., 2011

2007

EPConDB: a web resource for gene expression related to pancreatic development, beta-cell function and diabetes.

Joan M. Mazzarelli, John Brestelli, Regina K. Gorski, Junmin Liu, Elisabetta Manduchi, Deborah F. Pinney, Jonathan Schug, Peter White, Klaus H. Kaestner, Christian J. Stoeckert Jr.

Nucleic Acids Res., 2007

Data Integration and Pattern-Finding in Biological Sequence with TESS's Annotation Grammar and Extraction Language (AnGEL).

Jonathan Schug, Max Mintz, Christian J. Stoeckert Jr.

Proceedings of the Data Integration in the Life Sciences, 4th International Workshop, 2007

2003

PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data.

Amit Bahl, Brian P. Brunk, Jonathan Crabtree, Martin J. Fraunholz, Bindu Gajria, Gregory R. Grant, Hagai Ginsburg, Dinesh Gupta, Jessica C. Kissinger, Philip Labo, Li Li, Matthew D. Mailman, Arthur J. Milgram, David S. Pearson, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr., Patricia L. Whetzel

Nucleic Acids Res., 2003

2002

PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished).

Amit Bahl, Brian P. Brunk, Ross L. Coppel, Jonathan Crabtree, Sharon J. Diskin, Martin J. Fraunholz, Gregory R. Grant, Dinesh Gupta, Robert L. Huestis, Jessica C. Kissinger, Philip Labo, Li Li, Shannon K. McWeeney, Arthur J. Milgram, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr.

Nucleic Acids Res., 2002

Modeling and analyzing biomolecular networks.

Rajeev Alur, Calin Belta, Vijay Kumar, Max Mintz, George J. Pappas, Harvey Rubin, Jonathan Schug

Comput. Sci. Eng., 2002

Visual Programming for Modeling and Simulation of Biomolecular Regulatory Networks.

Rajeev Alur, Calin Belta, Franjo Ivancic, Vijay Kumar, Harvey Rubin, Jonathan Schug, Oleg Sokolsky, Jonathan Webb

Proceedings of the High Performance Computing, 2002

2001

K2/Kleisli and GUS: Experiments in integrated access to genomic data sources.

Susan B. Davidson, Jonathan Crabtree, Brian P. Brunk, Jonathan Schug, Val Tannen, G. Christian Overton, Christian J. Stoeckert Jr.

IBM Syst. J., 2001

A relational schema for both array-based and SAGE gene expression experiments.

Christian J. Stoeckert Jr., Angel D. Pizarro, Elisabetta Manduchi, M. Gibson, Brian P. Brunk, Jonathan Crabtree, Jonathan Schug, Shai Shen-Orr, G. Christian Overton

Bioinform., 2001

Stability and reachability analysis of a hybrid model of luminescence in the marine bacterium Vibrio fischeri.

Calin Belta, Jonathan Schug, Thao Dang, Vijay Kumar, George J. Pappas, Harvey Rubin, Paul Dunlap

Proceedings of the 40th IEEE Conference on Decision and Control, 2001

1997

Modeling Transcription Factor Binding Sites with Gibbs Sampling and Minimum Description Length Encoding.

Jonathan Schug, G. Christian Overton

Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997