Jonathan R. Nebeker

According to our database, Jonathan R. Nebeker authored at least 50 papers between 2002 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

A framework for inferring and analyzing pharmacotherapy treatment patterns.

Everett Neil Rush, Ozgur Ozmen, Minsu Kim, Erin Rush Ortegon, Makoto Jones, Byung H. Park, Steven Pizer, Jodie Trafton, Lisa A. Brenner, Merry Ward, Jonathan R. Nebeker

BMC Medical Informatics Decis. Mak., December, 2024

EHR-BERT: A BERT-based model for effective anomaly detection in electronic health records.

Haoran Niu, Olufemi A. Omitaomu, Michael A. Langston, Mohammed M. Olama, Özgür Özmen, Hilda B. Klasky, Angela Laurio, Merry Ward, Jonathan R. Nebeker

J. Biomed. Informatics, 2024

2023

CPViz: Visualizing clinical pathways represented in higher-order networks.

Junghoon Chae, Byung H. Park, Minsu Kim, Everett Neil Rush, Özgür Özmen, Makoto Jones, Merry Ward, Jonathan R. Nebeker

Proceedings of the Visualization and Data Analysis 2023, 2023

Towards a Comparative Assessment of Data-Driven Process Models in Health Information Technology.

Hilda B. Klasky, Özgür Özmen, Olufemi A. Omitaomu, Mohammed M. Olama, Merry Ward, Angela Laurio, Jonathan R. Nebeker

Proceedings of the 11th IEEE International Conference on Healthcare Informatics, 2023

2022

Detecting anomalous sequences in electronic health records using higher-order tensor networks.

Haoran Niu, Olufemi A. Omitaomu, Michael A. Langston, Mohammed M. Olama, Özgür Özmen, Hilda B. Klasky, Angela Laurio, Brian C. Sauer, Merry Ward, Jonathan R. Nebeker

J. Biomed. Informatics, 2022

CDS-Compare: A Web Application for Machine Learning Assisted Curation of Clinical Order Sets.

Zackary Falls, Steven H. Brown, Naveed Shah, Frank LeHouillier, Randeep Badwal, Kendria Hall, Gillian Franklin, William H. Kelly, Andrew Holdaway, Diane Montella, Linda Wedemeyer, Sarita Keni, Eric Rose, Jonathan R. Nebeker, Peter L. Elkin

Proceedings of the Challenges of Trustable AI and Added-Value on Health, 2022

A Systematic Review of Healthcare Information Technology Anomaly Classification.

Laura Pullum, Olufemi A. Omitaomu, Mohammed M. Olama, Addi Thakur Malviya, Ozgur Ozmer, Hilda B. Klasky, P. Teja Kuruganti, Merry Ward, Jeanie M. Scott, Angela Laurio, Brian C. Sauer, Frank Drews, Jonathan R. Nebeker

Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

Use of Event-Time Embeddings via RNN to Discern Novel Event Sequences in EHRs.

Özgür Özmen, Hilda B. Klasky, Olufemi A. Omitaomu, Mohammed M. Olama, P. Teja Kuruganti, Laura Pullum, Addi Thakur Malviya, Merry Ward, Jeanie M. Scott, Angela Laurio, Brian C. Sauer, Frank Drews, Jonathan R. Nebeker

Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

The Gaps in the Terminological Representation of the ACORN Social Determinants of Health Survey.

Melissa P. Resnick, Diane Montella, Wilmon McCray, Steven H. Brown, Keith E. Campbell, Jonathan R. Nebeker, Frank LeHouillier, Peter L. Elkin

Proceedings of the International Conference on Biomedical Ontology 2022 (ICBO), Ann Arbor, Michigan, USA, September 25, 2022

Real-time Multi-granular Analytics Framework for HIT Systems.

Byung H. Park, Sangkeun Lee, Özgür Özmen, Mohit Kumar, Merry Ward, Jonathan R. Nebeker

Proceedings of the IEEE International Conference on Big Data, 2022

Defining Long-Covid Profiles for Future Diagnoses Through Extensive Analysis of VA Covid-19 Data.

Skyler Resendez, Hugo Sebastian Ruiz Ayala, Wilmon McCray, Steven H. Brown, Jonathan R. Nebeker, Diane Montella, Peter L. Elkin

Proceedings of the AMIA 2022, 2022

Collaborative High Reliability Organization (HRO) Initiative in the Veterans Health Information Exchange (VHIE) Program.

Sandra Mitchell, Gay Stahr, Todd Turner, Jeffery Anderson, Jonathan R. Nebeker

Proceedings of the AMIA 2022, 2022

2021

Analysis of the cognitive demands of electronic health record use.

Mark S. Pfaff, Ozgur Eris, Charlene R. Weir, Amanda Anganes, Tina Crotty, Mohammad Rahman, Merry Ward, Jonathan R. Nebeker

J. Biomed. Informatics, 2021

A new methodological framework for hazard detection models in health information technology systems.

Olufemi A. Omitaomu, Hilda B. Klasky, Mohammed M. Olama, Özgür Özmen, Laura Pullum, Addi Thakur Malviya, P. Teja Kuruganti, Jeanie M. Scott, Angela Laurio, Frank Drews, Brian C. Sauer, Merry Ward, Jonathan R. Nebeker

J. Biomed. Informatics, 2021

A Knowledge Network-Based Approach to Facilitate Annotation of Clinical Pathway Component Clusters.

S. M. Shamimul Hasan, Minsu Kim, Byung H. Park, Makoto M. Jones, Merry Ward, Jonathan R. Nebeker

Proceedings of the IEEE EMBS International Conference on Biomedical and Health Informatics, 2021

2020

Characterizing Sub-Cohorts via Data Normalization and Representation Learning.

Everett Neil Rush, Özgür Özmen, Kathryn Knight, Byung H. Park, Clifton Baker, Makoto Jones, Merry Ward, Jonathan R. Nebeker

Proceedings of the 33rd IEEE International Symposium on Computer-Based Medical Systems, 2020

Converting Clinical Pathways to BPM+ Standards: A Case Study in Stable Ischemic Heart Disease.

Junghoon Chae, Byung H. Park, Makoto Jones, Merry Ward, Jonathan R. Nebeker

Proceedings of the 33rd IEEE International Symposium on Computer-Based Medical Systems, 2020

Adaptive Anomaly Detection for Dynamic Clinical Event Sequences.

Haoran Niu, Olufemi A. Omitaomu, Qing C. Cao, Mohammed M. Olama, Özgür Özmen, Hilda B. Klasky, Laura Pullum, Addi Thakur Malviya, P. Teja Kuruganti, Jeanie M. Scott, Angela Laurio, Frank Drews, Brian C. Sauer, Merry Ward, Jonathan R. Nebeker

Proceedings of the 2020 IEEE International Conference on Big Data (IEEE BigData 2020), 2020

2019

A Tale of Two Databases: The DoD and VA Infrastructure for Clinical Intelligence (DaVINCI).

Scott L. DuVall, Michael E. Matheny, Ildar R. Ibragimov, Trey D. Oats, Jay N. Tucker, Brett R. South, Augie Turano, Hamid Saoudian, Casey Kangas, Keith D. Hofmann, Wendy Funk, Chris Nichols, Albert Bonnema, Louis Ferrucci, Jonathan R. Nebeker

Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Topic Modeling to Discern Irregular Order Patterns in Unlabeled Electronic Health Records.

Özgür Özmen, Hilda B. Klasky, Olufemi A. Omitaomu, Mohammed M. Olama, P. Teja Kuruganti, Laura Pullum, Merry Ward, Jeanie M. Scott, Angela Laurio, Jonathan R. Nebeker

Proceedings of the 2019 IEEE EMBS International Conference on Biomedical & Health Informatics, 2019

One-Way and Round-Trip Analysis Demonstrates Surprising Limitations of Standards-Based Terminology Maps.

Steven H. Brown, Loren Stevenson, Daniel Territo, Jonathan R. Nebeker, Michael J. Lincoln, John Kilbourne, Holly Miller

Proceedings of the AMIA 2019, 2019

2018

The Department of Defense (DoD) and Department of Veterans Affairs (VA) Infrastructure for Clinical Intelligence (DaVINCI).

Scott L. DuVall, Michael E. Matheny, Ildar R. Ibragimov, Trey D. Oats, Jay N. Tucker, Brett R. South, Augie Turano, Hamid Saoudian, Casey Kangas, Keith D. Hofmann, Wendy Funk, Chris Nichols, Albert Bonnema, Louis Ferrucci, Jonathan R. Nebeker

Proceedings of the AMIA 2018, 2018

Veterans Health Information Exchange: Successes and Challenges of Nationwide Interoperability.

Margaret Donahue, Omar Bouhaddou, Nelson Hsing, Todd Turner, Glen Crandall, Joseph R. Nelson, Jonathan R. Nebeker

Proceedings of the AMIA 2018, 2018

Interoperability Progress and Remaining Data Quality Barriers of Certified Health Information Technologies.

John D. D'Amore, Omar Bouhaddou, Sandra Mitchell, Chun Li, Russell Leftwich, Todd Turner, Matthew Rahn, Margaret Donahue, Jonathan R. Nebeker

Proceedings of the AMIA 2018, 2018

On-Demand Health Information Exchange Strategy: Estimating the Amount of Duplicate Documents Sent and Received.

Omar Bouhaddou, Nelson Hsing, Nitin Jain, Jim Malpass, Margaret Donahue, Jonathan R. Nebeker

Proceedings of the AMIA 2018, 2018

2017

Effect of health information exchange on recognition of medication discrepancies is interrupted when data charges are introduced: results of a cluster-randomized controlled trial.

Kenneth S. Boockvar, William Ho, Jennifer Pruskowski, Katherine E. DiPalo, Jane J. Wong, Jessica Patel, Jonathan R. Nebeker, Rainu Kaushal, William Hung

J. Am. Medical Informatics Assoc., 2017

2016

VA's New Electronic Health Management Platform (eHMP): Novel Features for Activity Management and Notifications.

Jonathan R. Nebeker, Shane McNamee, David Douglas, James L. Hellewell, Kristian Johnson, Jessica Murphy, Ron Moody, Charlene R. Weir

Proceedings of the AMIA 2016, 2016

Automated Detection of Privacy Sensitive Conditions in C-CDAs: Security Labeling Services at the Department of Veterans Affairs.

Omar Bouhaddou, Mike Davis, Margaret Donahue, Anthony Mallia, Stephania Griffin, Jennifer Teal, Jonathan R. Nebeker

Proceedings of the AMIA 2016, 2016

2015

Maximizing clinical cohort size using free text queries.

Adi V. Gundlapalli, Doug Redd, Bryan Smith Gibson, Marjorie Carter, Chris Korhonen, Jonathan R. Nebeker, Matthew H. Samore, Qing Zeng-Treitler

Comput. Biol. Medicine, 2015

Uncovering the Cognitive Demands of EHR Use via Task Analysis.

Mark S. Pfaff, Ozgur Eris, Amanda Anganes, Tina Crotty, Jonathan R. Nebeker, Merry Ward

Proceedings of the AMIA 2015, 2015

Electronic Health Management Platform (eHMP): The Next Phase of VA's EHR.

Jonathan R. Nebeker, Walter P. Nichol, Shane McNamee, Jessica Murphy, James L. Hellewell, Reese Omizo, Kristian Johnson, Margaret V. McDonald, Kensaku Kawamoto, Guilherme Del Fiol, Emory Fry, Elaine Hunolt, Theresa Cullen, Scott D. Wood, Jennifer Herout, Charlene R. Weir

Proceedings of the AMIA 2015, 2015

Transforming the National Department of Veterans Affairs Data Warehouse to the OMOP Common Data Model.

Fern FitzHenry, Jesse Brannen, Jason N. Denton, Jonathan R. Nebeker, Scott L. DuVall, Freneka F. Minter, Jeffrey Scehnet, Brian C. Sauer, Lucila Ohno-Machado, Michael E. Matheny

Proceedings of the AMIA 2015, 2015

2014

Brief communication: pSCANNER: patient-centered Scalable National Network for Effectiveness Research.

Lucila Ohno-Machado, Zia Agha, Douglas S. Bell, Lisa Dahm, Michele E. Day, Jason N. Doctor, Davera Gabriel, Maninder K. Kahlon, Katherine K. Kim, Michael A. Hogarth, Michael E. Matheny, Daniella Meeker, Jonathan R. Nebeker

J. Am. Medical Informatics Assoc., 2014

Considerations of Dual Process Theories for EHR Design.

Charlene R. Weir, Bryan Smith Gibson, Alan H. Morris, Jorie Butler, Matthew H. Samore, Jonathan R. Nebeker

Proceedings of the AMIA 2014, 2014

Sophia: An Expedient UMLS Concept Extraction Annotator.

Guy Divita, Qing T. Zeng, Adi V. Gundlapalli, Scott L. DuVall, Jonathan R. Nebeker, Matthew H. Samore

Proceedings of the AMIA 2014, 2014

2013

Improve Retrieval Performance on Clinical Notes: A Comparison of Four Methods.

Doug Redd, Thomas C. Rindflesch, Jonathan R. Nebeker, Qing Zeng-Treitler

Proceedings of the 46th Hawaii International Conference on System Sciences, 2013

Support For Contextual Control In Primary Care: A Qualitative Analysis.

Charlene R. Weir, Frank Drews, Jorie Butler, Makoto L. Jones, Robyn Barrus, Jonathan R. Nebeker

Proceedings of the AMIA 2013, 2013

Integrating Information Objects and Annotations in the Notional DoD-VA iEHR User Experience: Results from a randomized controlled trial on efficiency and accuracy of problem assessment and intervention specification.

Jonathan R. Nebeker, Charlene R. Weir, James L. Hellewell, Molly Leecaster, Frank Drews, Robyn Barrus, Daniel Bolton, Gopi Penmetsa, Amelia E. Underwood

Proceedings of the AMIA 2013, 2013

Effects of Electronic Health Records Systems on the Exam-Room Communication Skills of Resident Physicians.

Leslie Lenert, Farrant Sakaguchi, Robert Dunlea, Kurt Barsch, Jonathan R. Nebeker, Caroline Milne

Proceedings of the AMIA 2013, 2013

2012

Synonym, Topic Model and Predicate-Based Query Expansion for Retrieving Clinical Documents.

Qing T. Zeng, Doug Redd, Thomas C. Rindflesch, Jonathan R. Nebeker

Proceedings of the AMIA 2012, 2012

The Orderly and Effective Visit: Impact of the Electronic Health Record on Modes of Cognitive Control.

Charlene R. Weir, Frank Drews, Molly Leecaster, Robyn Barrus, Jonathan R. Nebeker

Proceedings of the AMIA 2012, 2012

CASPR: Friendly Annotation Management.

Tyler Forbush, Brad Adams, Shuying Shen, Brett R. South, Jonathan R. Nebeker, Scott L. DuVall

Proceedings of the AMIA 2012, 2012

2011

The perception of medical professionals and medical students on the usefulness of an emergency medical card and a continuity of care report in enhancing continuity of care.

Christopher H. O. Olola, Scott P. Narus, Jonathan R. Nebeker, Mollie R. Poynton, Joseph Hales, Belle Rowan, Heather LeSieur, Cynthia Zumbrennen, Annemarie A. Edwards, Robert Crawford, Spencer Amundsen, Yasmin Kabir, Joseph Atkin, Cynthia Newberry, Jason Young, Tariq Hanifi, Ben Risenmay, Tyler Sorensen, R. Scott Evans

Int. J. Medical Informatics, 2011

Cognitive Analysis of a Medication Reconciliation Tool: Applying Laboratory and Naturalistic Approaches to System Evaluation.

André Kushniruk, Susan L. Santos, George Pourakis, Jonathan R. Nebeker, Kenneth S. Boockvar

Proceedings of the International Perspectives in Health Informatics, 2011

Creating Reusable Annotated Corpora with the Clinical Document Architecture.

Scott L. DuVall, Keith W. Boone, Adi V. Gundlapalli, Brett R. South, Shuying Shen, Jonathan R. Nebeker, Leonard W. D'Avolio, Matthew H. Samore

Proceedings of the 44th Hawaii International International Conference on Systems Science (HICSS-44 2011), 2011

2008

Informatics Tools for the Development of Action-Oriented Triggers for Outpatient Adverse Drug Events.

Hillary J. Mull, Jonathan R. Nebeker

Proceedings of the AMIA 2008, 2008

2007

Research Paper: A Cognitive Task Analysis of Information Management Strategies in a Computerized Provider Order Entry Environment.

Charlene R. Weir, Jonathan R. Nebeker, Bret L. Hicken, Rebecca Campo, Frank Drews, Beth LeBar

J. Am. Medical Informatics Assoc., 2007

Critical Issues in an Electronic Documentation System.

Charlene R. Weir, Jonathan R. Nebeker

Proceedings of the AMIA 2007, 2007

2003

Critical Gaps in the World's Largest Electronic Medical Record: Ad Hoc Nursing Narratives and Invisible Adverse Drug Events.

John F. Hurdle, Charlene R. Weir, Beverly Roth, Jennifer M. Hoffman, Jonathan R. Nebeker

Proceedings of the AMIA 2003, 2003

2002

Developing a Taxonomy for Research in Adverse Drug Events: Potholes and Signposts.

Jonathan R. Nebeker, John F. Hurdle, Jennifer M. Hoffman, Beverly Roth, Charlene R. Weir, Matthew H. Samore

J. Am. Medical Informatics Assoc., 2002