Jonathan Ozik

According to our database, Jonathan Ozik authored at least 44 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2024

Spatial inequities in access to medications for treatment of opioid use disorder highlight scarcity of methadone providers under counterfactual scenarios.

Eric Tatara, Qinyun Lin, Jonathan Ozik, Marynia Kolak, Nicholson T. Collier, Dylan Halpern, Luc Anselin, Harel Dahari, Basmattee Boodram, John A. Schneider

PLoS Comput. Biol., 2024

Bayesian calibration of stochastic agent based model via random forest.

Connor Robertson, Cosmin Safta, Nicholson T. Collier, Jonathan Ozik, Jaideep Ray

CoRR, 2024

Towards Improved Uncertainty Quantification of Stochastic Epidemic Models Using Sequential Monte Carlo.

Arindam Fadikar, Abby Stevens, Nicholson T. Collier, Kok Ben Toh, Olga Morozova, Anna Hotton, Jared Clark, David Higdon, Jonathan Ozik

Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2024

2023

Modeling suggests that virion production cycles within individual cells is key to understanding acute hepatitis B virus infection kinetics.

Atesmachew Hailegiorgis, Yuji Ishida, Nicholson T. Collier, Michio Imamura, Zhenzhen Shi, Vladimir Reinharz, Masataka Tsuge, Danny Barash, Nobuhiko Hiraga, Hiroshi Yokomichi, Chise Tateno, Jonathan Ozik, Susan L. Uprichard, Kazuaki Chayama, Harel Dahari

PLoS Comput. Biol., 2023

NSF RESUME HPC Workshop: High-Performance Computing and Large-Scale Data Management in Service of Epidemiological Modeling.

Abby Stevens, Jonathan Ozik, Kyle Chard, Jaline Gerardin, Justin M. Wozniak

CoRR, 2023

Trajectory-Oriented Optimization of Stochastic Epidemiological Models.

Arindam Fadikar, Nicholson T. Collier, Abby Stevens, Jonathan Ozik, Mickaël Binois, Kok Ben Toh

Proceedings of the Winter Simulation Conference, 2023

Developing Distributed High-performance Computing Capabilities of an Open Science Platform for Robust Epidemic Analysis.

Nicholson T. Collier, Justin M. Wozniak, Abby Stevens, Yadu N. Babuji, Mickaël Binois, Arindam Fadikar, Alexandra Würth, Kyle Chard, Jonathan Ozik

Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2023

PSI/J: A Portable Interface for Submitting, Monitoring, and Managing Jobs.

Mihael Hategan-Marandiuc, André Merzky, Nicholson T. Collier, Ketan Maheshwari, Jonathan Ozik, Matteo Turilli, Andreas Wilke, Justin M. Wozniak, Kyle Chard, Ian T. Foster, Rafael Ferreira da Silva, Shantenu Jha, Daniel E. Laney

Proceedings of the 19th IEEE International Conference on e-Science, 2023

2022

Sequentially calibrating a Bayesian microsimulation model to incorporate new information and assumptions.

Maria DeYoreo, Carolyn M. Rutter, Jonathan Ozik, Nicholson T. Collier

BMC Medical Informatics Decis. Mak., 2022

Distributed Agent-Based Simulation with Repast4Py.

Nicholson T. Collier, Jonathan Ozik

Proceedings of the Winter Simulation Conference, 2022

2021

Nested active learning for efficient model contextualization and parameterization: pathway to generating simulated populations using multi-scale computational models.

Chase Cockrell, Jonathan Ozik, Nick Collier, Gary An

Simul., 2021

Building and experimenting with an agent-based model to study the population-level impact of CommunityRx, a clinic-based community resource referral intervention.

Stacy Tessler Lindau, Jennifer A. Makelarski, Chaitanya Kaligotla, Emily Abramsohn, David G. Beiser, Chiahung Chou, Nicholson T. Collier, Elbert S. Huang, Charles M. Macal, Jonathan Ozik, Elizabeth L. Tung

PLoS Comput. Biol., 2021

A population data-driven workflow for COVID-19 modeling and learning.

Jonathan Ozik, Justin M. Wozniak, Nicholson T. Collier, Charles M. Macal, Mickaël Binois

Int. J. High Perform. Comput. Appl., 2021

Workflows Community Summit: Advancing the State-of-the-art of Scientific Workflows Management Systems Research and Development.

Rafael Ferreira da Silva, Henri Casanova, Kyle Chard, Tainã Coleman, Dan Laney, Dong H. Ahn, Shantenu Jha, Dorran Howell, Stian Soiland-Reyes, Ilkay Altintas, Douglas Thain, Rosa Filgueira, Yadu N. Babuji, Rosa M. Badia, Bartosz Balis, Silvina Caíno-Lores, Scott Callaghan, Frederik Coppens, Michael R. Crusoe, Kaushik De, Frank Di Natale, Tu Mai Anh Do, Bjoern Enders, Thomas Fahringer, Anne Fouilloux, Grigori Fursin, Alban Gaignard, Alex Ganose, Daniel Garijo, Sandra Gesing, Carole A. Goble, Adil Hasan, Sebastiaan Huber, Daniel S. Katz, Ulf Leser, Douglas Lowe, Bertram Ludäscher, Ketan Maheshwari, Maciej Malawski, Rajiv Mayani, Kshitij Mehta, André Merzky, Todd S. Munson, Jonathan Ozik, Loïc Pottier, Sashko Ristov, Mehdi Roozmeh, Renan Souza, Frédéric Suter, Benjamín Tovar, Matteo Turilli, Karan Vahi, Alvaro Vidal-Torreira, Wendy R. Whitcup, Michael Wilde, Alan R. Williams, Matthew Wolf, Justin M. Wozniak

CoRR, 2021

Workflows Community Summit: Bringing the Scientific Workflows Community Together.

Rafael Ferreira da Silva, Henri Casanova, Kyle Chard, Dan Laney, Dong H. Ahn, Shantenu Jha, Carole A. Goble, Lavanya Ramakrishnan, J. Luc Peterson, Bjoern Enders, Douglas Thain, Ilkay Altintas, Yadu N. Babuji, Rosa M. Badia, Vivien Bonazzi, Tainã Coleman, Michael R. Crusoe, Ewa Deelman, Frank Di Natale, Paolo Di Tommaso, Thomas Fahringer, Rosa Filgueira, Grigori Fursin, Alex Ganose, Björn A. Grüning, Daniel S. Katz, Olga A. Kuchar, Ana Kupresanin, Bertram Ludäscher, Ketan Maheshwari, Marta Mattoso, Kshitij Mehta, Todd S. Munson, Jonathan Ozik, Tom Peterka, Loic Pottier, Tim Randles, Stian Soiland-Reyes, Benjamín Tovar, Matteo Turilli, Thomas D. Uram, Karan Vahi, Michael Wilde, Matthew Wolf, Justin M. Wozniak

CoRR, 2021

A Community Roadmap for Scientific Workflows Research and Development.

Rafael Ferreira da Silva, Henri Casanova, Kyle Chard, Ilkay Altintas, Rosa M. Badia, Bartosz Balis, Tainã Coleman, Frederik Coppens, Frank Di Natale, Bjoern Enders, Thomas Fahringer, Rosa Filgueira, Grigori Fursin, Daniel Garijo, Carole A. Goble, Dorran Howell, Shantenu Jha, Daniel S. Katz, Daniel E. Laney, Ulf Leser, Maciej Malawski, Kshitij Mehta, Loïc Pottier, Jonathan Ozik, J. Luc Peterson, Lavanya Ramakrishnan, Stian Soiland-Reyes, Douglas Thain, Matthew Wolf

Proceedings of the 2021 IEEE Workshop on Workflows in Support of Large-Scale Science (WORKS), 2021

Application of Distributed Agent-based Modeling to Investigate Opioid Use Outcomes in Justice Involved Populations.

Eric Tatara, John A. Schneider, Madeline Quasebarth, Nicholson T. Collier, Harold Pollack, Basmattee Boodram, Samuel H. Friedman, Elizabeth Salisbury-Afshar, Mary Ellen Mackesy-Amiti, Jonathan Ozik

Proceedings of the IEEE International Parallel and Distributed Processing Symposium Workshops, 2021

Load Balancing Schemes for Large Synthetic Population-Based Complex Simulators.

Bogdan Mucenic, Chaitanya Kaligotla, Abby Stevens, Jonathan Ozik, Nicholson T. Collier, Charles M. Macal

Proceedings of the IEEE International Parallel and Distributed Processing Symposium Workshops, 2021

2020

Model Exploration of an Information-Based Healthcare Intervention Using Parallelization and Active Learning.

Chaitanya Kaligotla, Jonathan Ozik, Nicholson T. Collier, Charles M. Macal, Kelly Boyd, Jennifer A. Makelarski, Elbert S. Huang, Stacy T. Lindau

J. Artif. Soc. Soc. Simul., 2020

High-bypass Learning: Automated Detection of Tumor Cells That Significantly Impact Drug Response.

Justin M. Wozniak, Hyun Seung Yoo, Jamaludin Mohd-Yusof, Bogdan Nicolae, Nicholson T. Collier, Jonathan Ozik, Thomas S. Brettin, Rick Stevens

Proceedings of the 6th IEEE/ACM Workshop on Machine Learning in High Performance Computing Environments, 2020

Experiences in Developing a Distributed Agent-based Modeling Toolkit with Python.

Nicholson T. Collier, Jonathan Ozik, Eric R. Tatara

Proceedings of the 9th IEEE/ACM Workshop on Python for High-Performance and Scientific Computing, 2020

2019

Multi-Objective Model Exploration of Hepatitis C Elimination in an Agent-Based Model of People who Inject Drugs.

Eric Tatara, Nicholson T. Collier, Jonathan Ozik, Alexander Gutfraind, Scott J. Cotler, Harel Dahari, Marian Major, Basmattee Boodram

Proceedings of the 2019 Winter Simulation Conference, 2019

Hybrid Simulation Development - Is It Just Analytics?

David Bell, Derek Groen, Navonil Mustafee, Jonathan Ozik, Steffen Straßburger

Proceedings of the 2019 Winter Simulation Conference, 2019

2018

Extreme-Scale Dynamic Exploration of a Distributed Agent-Based Model With the EMEWS Framework.

Jonathan Ozik, Nicholson T. Collier, Justin M. Wozniak, Charles M. Macal, Gary An

IEEE Trans. Comput. Soc. Syst., 2018

CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research.

Justin M. Wozniak, Rajeev Jain, Prasanna Balaprakash, Jonathan Ozik, Nicholson T. Collier, John Bauer, Fangfang Xia, Thomas S. Brettin, Rick Stevens, Jamaludin Mohd-Yusof, Cristina Garcia-Cardona, Brian Van Essen, Matthew Baughman

BMC Bioinform., 2018

High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow.

Jonathan Ozik, Nicholson T. Collier, Justin M. Wozniak, Charles M. Macal, Chase Cockrell, Samuel H. Friedman, Ahmadreza Ghaffarizadeh, Randy W. Heiland, Gary An, Paul Macklin

BMC Bioinform., 2018

Chisim: an Agent-based simulation Model of Social Interactions in a Large Urban Area.

Charles M. Macal, Nicholson T. Collier, Jonathan Ozik, Eric R. Tatara, John T. Murphy

Proceedings of the 2018 Winter Simulation Conference, 2018

Modeling an Information-based Community Health Intervention on the South Side of Chicago.

Chaitanya Kaligotla, Jonathan Ozik, Nicholson T. Collier, Charles M. Macal, Stacy T. Lindau, Emily Abramsohn, Elbert S. Huang

Proceedings of the 2018 Winter Simulation Conference, 2018

Portable and Reusable Deep Learning Infrastructure with Containers to Accelerate Cancer Studies.

George F. Zaki, Justin M. Wozniak, Jonathan Ozik, Nicholson T. Collier, Thomas S. Brettin, Rick Stevens

Proceedings of the 4th International Workshop on Extreme Scale Programming Models and Middleware, 2018

2017

Streaming supercomputing needs workflow-enabled programming-in-the-large.

Justin M. Wozniak, Jonathan Ozik, Daniel S. Katz, Michael Wilde

CoRR, 2017

Endogenous Social Networks from Large-Scale Agent-Based Models.

Eric Tatara, Nicholson T. Collier, Jonathan Ozik, Charles M. Macal

Proceedings of the 2017 IEEE International Parallel and Distributed Processing Symposium Workshops, 2017

2016

From desktop to Large-Scale Model Exploration with Swift/T.

Jonathan Ozik, Nicholson T. Collier, Justin M. Wozniak, Carmine Spagnuolo

Proceedings of the Winter Simulation Conference, 2016

2015

Repast Simphony Statecharts.

Jonathan Ozik, Nicholson T. Collier, Todd Combs, Charles M. Macal, Michael J. North

J. Artif. Soc. Soc. Simul., 2015

Simulating regional hydrology and water management: an integrated agent-based approach.

John T. Murphy, Jonathan Ozik, Nicholson T. Collier, Mark Altaweel, Richard B. Lammers, Alexander A. Prusevich, Andrew D. Kliskey, Lilian N. Alessa

Proceedings of the 2015 Winter Simulation Conference, 2015

Large-Scale Agent-Based Modeling with Repast HPC: A Case Study in Parallelizing an Agent-Based Model.

Nicholson T. Collier, Jonathan Ozik, Charles M. Macal

Proceedings of the Euro-Par 2015: Parallel Processing Workshops, 2015

2014

Simulating water, individuals, and management using a coupled and distributed approach.

Jonathan Ozik, Nicholson T. Collier, John T. Murphy, Mark Altaweel, Richard B. Lammers, Alexander A. Prusevich, Andrew D. Kliskey, Lilian N. Alessa

Proceedings of the 2014 Winter Simulation Conference, 2014

Adaptive Simulation with Repast Simphony and Swift.

Jonathan Ozik, Michael Wilde, Nicholson T. Collier, Charles M. Macal

Proceedings of the Euro-Par 2014: Parallel Processing Workshops, 2014

Modeling Solar PV Adoption: A Social-Behavioral Agent-Based Framework.

Charles M. Macal, Diane J. Graziano, Jonathan Ozik

Proceedings of the 2014 AAAI Fall Symposia, Arlington, Virginia, USA, November 13-15, 2014, 2014

2013

Complex adaptive systems modeling with Repast Simphony.

Michael J. North, Nicholson T. Collier, Jonathan Ozik, Eric R. Tatara, Charles M. Macal, Mark J. Bragen, Pam Sydelko

Complex Adapt. Syst. Model., 2013

The ReLogo agent-based modeling language.

Jonathan Ozik, Nicholson T. Collier, John T. Murphy, Michael J. North

Proceedings of the Winter Simulations Conference: Simulation Making Decisions in a Complex World, 2013

Test-driven agent-based simulation development.

Nicholson T. Collier, Jonathan Ozik

Proceedings of the Winter Simulations Conference: Simulation Making Decisions in a Complex World, 2013

2009

Data Theory, Discourse Mining and Thresholds.

David L. Sallach, Jonathan Ozik

Proceedings of the Complex Adaptive Systems and the Threshold Effect, 2009

2008

Modeling Dynamic Multiscale Social Processes in Agent-Based Models.

Jonathan Ozik, David L. Sallach, Charles M. Macal

IEEE Intell. Syst., 2008

Modeling Endogenous Coordination Using a Dynamic Language.

Jonathan Ozik, Michael J. North

Proceedings of the Simulating Interacting Agents and Social Phenomena, 2008