Jonathan M. Carlson

According to our database, Jonathan M. Carlson authored at least 8 papers between 2006 and 2015.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2015

: Comprehensive Sieve Analysis of Breakthrough HIV-1 Sequences in the RV144 Vaccine Efficacy Trial.

Paul Thatcher Edlefsen, Morgane Rolland, Tomer Hertz, Sodsai Tovanabutra, Andrew J. Gartland, Allan C. deCamp, Craig A. Magaret, Hasan Ahmed, Raphael Gottardo, Michal Juraska, Connor McCoy, Brendan B. Larsen, Eric Sanders-Buell, Chris Carrico, Sergey Menis, Meera Bose, Miguel A. Arroyo, Robert J. O'Connell, Sorachai Nitayaphan, Punnee Pitisuttithum, Jaranit Kaewkungwal, Supachai Rerks-Ngarm, Merlin L. Robb, Tatsiana Kirys, Ivelin Georgiev, Peter D. Kwong, Konrad Scheffler, Sergei L. Kosakovsky Pond, Jonathan M. Carlson, Nelson Michael, William R. Schief, James I. Mullins, Jerome H. Kim, Peter B. Gilbert

PLoS Comput. Biol., 2015

2009

PhyloDet: a scalable visualization tool for mapping multiple traits to large evolutionary trees.

Bongshin Lee, Lev Nachmanson, George G. Robertson, Jonathan M. Carlson, David Heckerman

Bioinform., 2009

2008

Phylogenetic Dependency Networks: Inferring Patterns of CTL Escape and Codon Covariation in HIV-1 Gag.

Jonathan M. Carlson, Zabrina L. Brumme, Christine M. Rousseau, Chanson J. Brumme, Philippa Matthews, Carl Myers Kadie, James I. Mullins, Bruce D. Walker, P. Richard Harrigan, Philip J. R. Goulder, David Heckerman

PLoS Comput. Biol., 2008

2007

SCOPE: a web server for practical <i>de novo</i> motif discovery.

Jonathan M. Carlson, Arijit Chakravarty, Charles E. DeZiel, Robert H. Gross

Nucleic Acids Res., 2007

A novel ensemble learning method for <i>de novo </i>computational identification of DNA binding sites.

Arijit Chakravarty, Jonathan M. Carlson, Radhika S. Khetani, Robert H. Gross

BMC Bioinform., 2007

SPACER: identification of <i>cis</i>-regulatory elements with non-contiguous critical residues.

Arijit Chakravarty, Jonathan M. Carlson, Radhika S. Khetani, Charles E. DeZiel, Robert H. Gross

Bioinform., 2007

2006

BEAM: A Beam Search Algorithm for the Identification of Cis-Regulatory Elements in Groups of Genes.

Jonathan M. Carlson, Arijit Chakravarty, Robert H. Gross

J. Comput. Biol., 2006

Bounded search for de novo identification of degenerate cis-regulatory elements.

Jonathan M. Carlson, Arijit Chakravarty, Radhika S. Khetani, Robert H. Gross

BMC Bioinform., 2006