Jonas S. Almeida
Orcid: 0000-0002-7883-7922
According to our database1,
Jonas S. Almeida
authored at least 65 papers
between 2001 and 2024.
Collaborative distances:
Collaborative distances:
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Bibliography
2024
CoRR, 2024
TMA-Grid: An open-source, zero-footprint web application for FAIR Tissue MicroArray De-arraying.
CoRR, 2024
FastImpute: A Baseline for Open-source, Reference-Free Genotype Imputation Methods - A Case Study in PRS313.
CoRR, 2024
ClusterRadar: an Interactive Web-Tool for the Multi-Method Exploration of Spatial Clusters Over Time.
CoRR, 2024
CoRR, 2024
Demystifying Spatial Dependence: Interactive Visualizations for Interpreting Local Spatial Autocorrelation.
Proceedings of the IEEE Visualization and Visual Analytics, 2024
2023
BMC Medical Informatics Decis. Mak., December, 2023
Proceedings of the 29th Americas Conference on Information Systems, 2023
2022
CoRR, 2022
PLCOjs, a FAIR GWAS web SDK for the NCI Prostate, Lung, Colorectal and Ovarian Cancer Genetic Atlas project.
Bioinform., 2022
Tutorial - Machine Learning and Information Theoretic Methods for Molecular Biology and Medicine.
Proceedings of the 30th European Symposium on Artificial Neural Networks, 2022
2020
2019
Utilizing Automated Breast Cancer Detection to Identify Spatial Distributions of Tumor Infiltrating Lymphocytes in Invasive Breast Cancer.
CoRR, 2019
2018
Interpretable Machine Learning Approach Reveals Developmental Gene Expression Biomarkers for Cancer Patient Outcomes at Early Stages.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
2017
2016
S2CR3UM: A Solution to the In Silico Relevance, Reliability & Reproducibility Conundrum.
Proceedings of the AMIA 2016, 2016
Proceedings of the AMIA 2016, 2016
2015
Proceedings of the AMIA 2015, 2015
OpenHealth Platform for Interactive Contextualization of Population Health Open Data.
Proceedings of the AMIA 2015, 2015
2014
Non-synonymous variations in cancer and their effects on the human proteome: workflow for NGS data biocuration and proteome-wide analysis of TCGA data.
BMC Bioinform., 2014
J. Biomed. Semant., 2014
2013
ICT Strategies for Bridging Biology and Precision Medicine (Dagstuhl Perspectives Workshop 13342).
Dagstuhl Reports, 2013
Dagstuhl Manifestos, 2013
Proceedings of the 2013 International Joint Conference on Neural Networks, 2013
Proceedings of the I-SEMANTICS 2013 - 9th International Conference on Semantic Systems, 2013
TCGA Toolbox: an Open Web App Framework for Distributing Big Data Analysis Pipelines for Cancer Genomics.
Proceedings of the ACM Conference on Bioinformatics, 2013
2012
Pattern matching through Chaos Game Representation: bridging numerical and discrete data structures for biological sequence analysis.
Algorithms Mol. Biol., 2012
2011
S3QL: A distributed domain specific language for controlled semantic integration of life sciences data.
BMC Bioinform., 2011
2010
AGUIA: autonomous graphical user interface assembly for clinical trials semantic data services.
BMC Medical Informatics Decis. Mak., 2010
S3DB core: a framework for RDF generation and management in bioinformatics infrastructures.
BMC Bioinform., 2010
2009
BMC Syst. Biol., 2009
Biological sequences as pictures - a generic two dimensional solution for iterated maps.
BMC Bioinform., 2009
Using an artificial neural network to predict necrotizing enterocolitis in premature infants.
Proceedings of the International Joint Conference on Neural Networks, 2009
2008
RPPAML/RIMS: A metadata format and an information management system for reverse phase protein arrays.
BMC Bioinform., 2008
An open-source representation for 2-DE-centric proteomics and support infrastructure for data storage and analysis.
BMC Bioinform., 2008
Proceedings of the Data Integration in the Life Sciences, 5th International Workshop, 2008
2007
BMC Bioinform., 2007
Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement.
BMC Bioinform., 2007
2006
Parameter selection for and implementation of a web-based decision-support tool to predict extubation outcome in premature infants.
BMC Medical Informatics Decis. Mak., 2006
mGrid: A load-balanced distributed computing environment for the remote execution of the user-defined Matlab code.
BMC Bioinform., 2006
BMC Bioinform., 2006
Algorithms Mol. Biol., 2006
2005
Local correlation of expression profiles with gene annotations-proof of concept for a general conciliatory method.
Bioinform., 2005
2004
An XML standard for the dissemination of annotated 2D gel electrophoresis data complemented with mass spectrometry results.
BMC Bioinform., 2004
Optimal cDNA microarray design using expressed sequence tags for organisms with limited genomic information.
BMC Bioinform., 2004
Bioinform., 2004
Comparative evaluation of word composition distances for the recognition of SCOP relationships.
Bioinform., 2004
2003
EURISWEB - Web-based epidemiological surveillance of antibiotic-resistant pneumococci in Day Care Centers.
BMC Medical Informatics Decis. Mak., 2003
Proceedings of the Genetic and Evolutionary Computation, 2003
Web-based prediction of extubation outcome in premature infants on mechanical ventilation using an artificial neural network.
Proceedings of the AMIA 2003, 2003
2002
BMC Bioinform., 2002
2001