John Sidney

According to our database, John Sidney authored at least 15 papers between 2003 and 2016.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2016

An ontology for major histocompatibility restriction.

Randi Vita, James A. Overton, Emily Seymour, John Sidney, Jim Kaufman, Rebecca L. Tallmadge, Shirley Ellis, John Hammond, Geoff W. Butcher, Alessandro Sette, Bjoern Peters

J. Biomed. Semant., 2016

2015

Automated benchmarking of peptide-MHC class I binding predictions.

Thomas Trolle, Imir G. Metushi, Jason A. Greenbaum, Yohan Kim, John Sidney, Ole Lund, Alessandro Sette, Bjoern Peters, Morten Nielsen

Bioinform., 2015

2014

Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions.

Yohan Kim, John Sidney, Søren Buus, Alessandro Sette, Morten Nielsen, Bjoern Peters

BMC Bioinform., 2014

Development and validation of a broad scheme for prediction of HLA class II restricted T cell epitopes.

Sinu Paul, John Sidney, Bjoern Peters, Alessandro Sette

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2010

Peptide binding predictions for HLA DR, DP and DQ molecules.

Peng Wang, John Sidney, Yohan Kim, Alessandro Sette, Ole Lund, Morten Nielsen, Björn Peters

BMC Bioinform., 2010

An automatic computational pipeline to display MHC binding motifs.

Peng Wang, Björn Peters, John Sidney, Alessandro Sette

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009

Derivation of an amino acid similarity matrix for peptide: MHC binding and its application as a Bayesian prior.

Yohan Kim, John Sidney, Clemencia Pinilla, Alessandro Sette, Björn Peters

BMC Bioinform., 2009

2008

A Systematic Assessment of MHC Class II Peptide Binding Predictions and Evaluation of a Consensus Approach.

Peng Wang, John Sidney, Courtney Dow, Bianca Mothé, Alessandro Sette, Björn Peters

PLoS Comput. Biol., 2008

2007

Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines.

Huynh-Hoa Bui, John Sidney, Wei Li, Nicholas Fusseder, Alessandro Sette

BMC Bioinform., 2007

2006

A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules.

Bjoern Peters, Huynh-Hoa Bui, Sune Frankild, Morten Nielsen, Claus Lundegaard, Emrah Kostem, Derek Basch, Kasper Lamberth, Mikkel Harndahl, Ward Fleri, Stephen S. Wilson, John Sidney, Ole Lund, Søren Buus, Alessandro Sette

PLoS Comput. Biol., 2006

Curation of complex, context-dependent immunological data.

Randi Vita, Kerrie Vaughan, Laura Zarebski, Nima Salimi, Ward Fleri, Howard Grey, Muthu Sathiamurthy, John Mokili, Huynh-Hoa Bui, Philip E. Bourne, Julia V. Ponomarenko, Romulo de Castro Jr., Russell K. Chan, John Sidney, Stephen S. Wilson, Scott Stewart, Scott Way, Björn Peters, Alessandro Sette

BMC Bioinform., 2006

Predicting population coverage of T-cell epitope-based diagnostics and vaccines.

Huynh-Hoa Bui, John Sidney, Kenny Dinh, Scott Southwood, Mark J. Newman, Alessandro Sette

BMC Bioinform., 2006

Improving MHC binding peptide prediction by incorporating binding data of auxiliary MHC molecules.

Shanfeng Zhu, Keiko Udaka, John Sidney, Alessandro Sette, Kiyoko F. Aoki-Kinoshita, Hiroshi Mamitsuka

Bioinform., 2006

The Immune Epitope Database and Analysis Resource.

Alessandro Sette, Huynh-Hoa Bui, John Sidney, Philip E. Bourne, Søren Buus, Ward Fleri, R. Kubo, Ole Lund, D. Nemazee, Julia V. Ponomarenko, Muthu Sathiamurthy, Scott Stewart, Scott Way, Stephen S. Wilson, Björn Peters

Proceedings of the Pattern Recognition in Bioinformatics, International Workshop, 2006

2003

Examining the independent binding assumption for binding of peptide epitopes to MHC-I molecules.

Björn Peters, Weiwei Tong, John Sidney, Alessandro Sette, Zhiping Weng

Bioinform., 2003