John S. Lowengrub

Orcid: 0000-0003-1759-0900

Affiliations:
  • University of California, Irvine, Department of Mathematics, CA, USA


According to our database1, John S. Lowengrub authored at least 61 papers between 1993 and 2024.

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Bibliography

2024
PIEZO1 regulates leader cell formation and cellular coordination during collective keratinocyte migration.
PLoS Comput. Biol., 2024

BiLO: Bilevel Local Operator Learning for PDE inverse problems.
CoRR, 2024

2023
Sharp-interface problem of the Ohta-Kawasaki model for symmetric diblock copolymers.
J. Comput. Phys., May, 2023

The Liver Tumor Segmentation Benchmark (LiTS).
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Medical Image Anal., 2023

Individualizing Glioma Radiotherapy Planning by Optimization of a Data and Physics Informed Discrete Loss.
CoRR, 2023

Personalized Predictions of Glioblastoma Infiltration: Mathematical Models, Physics-Informed Neural Networks and Multimodal Scans.
CoRR, 2023

2022
Correction: Stress generation, relaxation and size control in confined tumor growth.
PLoS Comput. Biol., 2022

Spatial dynamics of feedback and feedforward regulation in cell lineages.
PLoS Comput. Biol., 2022

Mathematical modeling of cancer immunotherapy for personalized clinical translation.
Nat. Comput. Sci., 2022

Nonlinear simulation of vascular tumor growth with chemotaxis and the control of necrosis.
J. Comput. Phys., 2022

Second order approximation for a quasi-incompressible Navier-Stokes Cahn-Hilliard system of two-phase flows with variable density.
J. Comput. Phys., 2022

Phase field modeling and computation of vesicle growth or shrinkage.
CoRR, 2022

Numerical study on viscous fingering using electric fields in a Hele-Shaw cell.
CoRR, 2022

2021
Corrections to "A multiscale Agent-Based Model of Ductal Carcinoma in Situ".
IEEE Trans. Biomed. Eng., 2021

Stress generation, relaxation and size control in confined tumor growth.
PLoS Comput. Biol., 2021

2020
A Multiscale Agent-Based Model of Ductal Carcinoma In Situ.
IEEE Trans. Biomed. Eng., 2020

Higher-order accurate diffuse-domain methods for partial differential equations with Dirichlet boundary conditions in complex, evolving geometries.
J. Comput. Phys., 2020

2019
Personalized Radiotherapy Design for Glioblastoma: Integrating Mathematical Tumor Models, Multimodal Scans, and Bayesian Inference.
IEEE Trans. Medical Imaging, 2019

Hydrodynamics of transient cell-cell contact: The role of membrane permeability and active protrusion length.
PLoS Comput. Biol., 2019

Efficient simulation of thermally fluctuating biopolymers immersed in fluids on 1-micron, 1-second scales.
J. Comput. Phys., 2019

Morphological stability of an elastic tumor-host interface.
J. Comput. Appl. Math., 2019

Complex far-field geometries determine the stability of solid tumor growth with chemotaxis.
CoRR, 2019

The Liver Tumor Segmentation Benchmark (LiTS).
CoRR, 2019

Boundary integral methods for dispersive equations, Airy flow and the modified Korteweg de Vries equation.
Adv. Comput. Math., 2019

2018
Computation of a Shrinking Interface in a Hele-Shaw Cell.
SIAM J. Sci. Comput., 2018

A Uniquely Solvable, Energy Stable Numerical Scheme for the Functionalized Cahn-Hilliard Equation and Its Convergence Analysis.
J. Sci. Comput., 2018

A mass-conservative adaptive FAS multigrid solver for cell-centered finite difference methods on block-structured, locally-cartesian grids.
J. Comput. Phys., 2018

Efficient energy stable schemes for isotropic and strongly anisotropic Cahn-Hilliard systems with the Willmore regularization.
J. Comput. Phys., 2018

Personalized Radiotherapy Planning for Glioma Using Multimodal Bayesian Model Calibration.
CoRR, 2018

2017
Multiscale Modeling of Glioblastoma Suggests that the Partial Disruption of Vessel/Cancer Stem Cell Crosstalk Can Promote Tumor Regression Without Increasing Invasiveness.
IEEE Trans. Biomed. Eng., 2017

Automated Unsupervised Segmentation of Liver Lesions in CT scans via Cahn-Hilliard Phase Separation.
CoRR, 2017

2016
Feedback, Lineages and Self-Organizing Morphogenesis.
PLoS Comput. Biol., 2016

Numerical simulation of endocytosis: Viscous flow driven by membranes with non-uniformly distributed curvature-inducing molecules.
J. Comput. Phys., 2016

An energy stable, hexagonal finite difference scheme for the 2D phase field crystal amplitude equations.
J. Comput. Phys., 2016

Collective Properties of a Transcription Initiation Model Under Varying Environment.
J. Comput. Biol., 2016

Nonlinear simulations of elastic fingering in a Hele-Shaw cell.
J. Comput. Appl. Math., 2016

An interface-fitted adaptive mesh method for elliptic problems and its application in free interface problems with surface tension.
Adv. Comput. Math., 2016

2015
POPE: post optimization posterior evaluation of likelihood free models.
BMC Bioinform., 2015

2014
A numerical method for the quasi-incompressible Cahn-Hilliard-Navier-Stokes equations for variable density flows with a discrete energy law.
J. Comput. Phys., 2014

Second order convex splitting schemes for periodic nonlocal Cahn-Hilliard and Allen-Cahn equations.
J. Comput. Phys., 2014

Diffuse interface models of locally inextensible vesicles in a viscous fluid.
J. Comput. Phys., 2014

2013
Convergence Analysis of a Second Order Convex Splitting Scheme for the Modified Phase Field Crystal Equation.
SIAM J. Numer. Anal., 2013

Energy stable and efficient finite-difference nonlinear multigrid schemes for the modified phase field crystal equation.
J. Comput. Phys., 2013

2012
Modeling an Elastic Fingering Instability in a Reactive Hele-Shaw Flow.
SIAM J. Appl. Math., 2012

Predicting simulation parameters of biological systems using a Gaussian process model.
Stat. Anal. Data Min., 2012

A level-set continuum method for two-phase flows with insoluble surfactant.
J. Comput. Phys., 2012

2011
An adaptive multigrid algorithm for simulating solid tumor growth using mixture models.
Math. Comput. Model., 2011

A diffuse-interface method for two-phase flows with soluble surfactants.
J. Comput. Phys., 2011

A grid based particle method for solving partial differential equations on evolving surfaces and modeling high order geometrical motion.
J. Comput. Phys., 2011

2010
Dynamics of multicomponent vesicles in a viscous fluid.
J. Comput. Phys., 2010

2009
An Energy-Stable and Convergent Finite-Difference Scheme for the Phase Field Crystal Equation.
SIAM J. Numer. Anal., 2009

Stable and efficient finite-difference nonlinear-multigrid schemes for the phase field crystal equation.
J. Comput. Phys., 2009

2008
A New Ghost Cell/Level Set Method for Moving Boundary Problems: Application to Tumor Growth.
J. Sci. Comput., 2008

2007
Solving the regularized, strongly anisotropic Cahn-Hilliard equation by an adaptive nonlinear multigrid method.
J. Comput. Phys., 2007

A rescaling scheme with application to the long-time simulation of viscous fingering in a Hele-Shaw cell.
J. Comput. Phys., 2007

2006
An adaptive coupled level-set/volume-of-fluid interface capturing method for unstructured triangular grids.
J. Comput. Phys., 2006

A level-set method for interfacial flows with surfactant.
J. Comput. Phys., 2006

An improved geometry-aware curvature discretization for level set methods: Application to tumor growth.
J. Comput. Phys., 2006

1999
Almost optimal convergence of the point vortex method for vortex sheets using numerical filtering.
Math. Comput., 1999

1993
High-Order and Efficient Methods for the Vorticity Formulation of the Euler Equations.
SIAM J. Sci. Comput., 1993

The Convergence of an Exact Desingularization for Vortex Methods.
SIAM J. Sci. Comput., 1993


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