John Quackenbush
Orcid: 0000-0002-2702-5879Affiliations:
- Dana-Farber Cancer Institute, Boston, USA
According to our database1,
John Quackenbush
authored at least 70 papers
between 2000 and 2024.
Collaborative distances:
Collaborative distances:
Timeline
Legend:
Book In proceedings Article PhD thesis Dataset OtherLinks
Online presence:
-
on orcid.org
-
on id.loc.gov
On csauthors.net:
Bibliography
2024
Not all tickets are equal and we know it: Guiding pruning with domain-specific knowledge.
CoRR, 2024
Proceedings of the Research in Computational Molecular Biology, 2024
Proceedings of the Research in Computational Molecular Biology, 2024
2022
Nucleic Acids Res., 2022
2021
Proceedings of the Advances in Neural Information Processing Systems 34: Annual Conference on Neural Information Processing Systems 2021, 2021
Proceedings of the Thirty-Fifth AAAI Conference on Artificial Intelligence, 2021
Proceedings of the Thirty-Fifth AAAI Conference on Artificial Intelligence, 2021
2020
Clustering Sparse Data With Feature Correlation With Application to Discover Subtypes in Cancer.
IEEE Access, 2020
A Novel Deep Learning Model by Stacking Conditional Restricted Boltzmann Machine and Deep Neural Network.
Proceedings of the KDD '20: The 26th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, 2020
Proceedings of the KDD '20: The 26th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, 2020
2019
Identification of differentially expressed gene sets using the Generalized Berk-Jones statistic.
Bioinform., 2019
Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019
2018
Clustering on Sparse Data in Non-overlapping Feature Space with Applications to Cancer Subtyping.
Proceedings of the IEEE International Conference on Data Mining, 2018
2017
Network-based Distance Metric with Application to Discover Disease Subtypes in Cancer.
CoRR, 2017
BMC Bioinform., 2017
BMC Bioinform., 2017
2016
BatchQC: interactive software for evaluating sample and batch effects in genomic data.
Bioinform., 2016
Bioinform., 2016
2015
Integrating transcriptional and protein interaction networks to prioritize condition-specific master regulators.
BMC Syst. Biol., 2015
High performance computing of gene regulatory networks using a message-passing model.
Proceedings of the 2015 IEEE High Performance Extreme Computing Conference, 2015
2014
BMC Syst. Biol., 2014
Analyzing networks of phenotypes in complex diseases: methodology and applications in COPD.
BMC Syst. Biol., 2014
2013
Research and applications: Comparison and validation of genomic predictors for anticancer drug sensitivity.
J. Am. Medical Informatics Assoc., 2013
Bioinform., 2013
2012
PLoS Comput. Biol., 2012
Predictive networks: a flexible, open source, web application for integration and analysis of human gene networks.
Nucleic Acids Res., 2012
GeneSigDB: a manually curated database and resource for analysis of gene expression signatures.
Nucleic Acids Res., 2012
nEASE: a method for gene ontology subclassification of high-throughput gene expression data.
Bioinform., 2012
2011
BMC Bioinform., 2011
<i>survcomp</i>: an R/Bioconductor package for performance assessment and comparison of survival models.
Bioinform., 2011
Exome sequencing-based copy-number variation and loss of heterozygosity detection: ExomeCNV.
Bioinform., 2011
Bioinform., 2011
2010
Nucleic Acids Res., 2010
2009
Proceedings of the Encyclopedia of Artificial Intelligence (3 Volumes), 2009
BMC Bioinform., 2009
An improved empirical bayes approach to estimating differential gene expression in microarray time-course data: BETR (Bayesian Estimation of Temporal Regulation).
BMC Bioinform., 2009
Papers on normalization, variable selection, classification or clustering of microarray data.
Bioinform., 2009
Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009
2008
BMC Syst. Biol., 2008
2007
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007
2006
BMC Bioinform., 2006
2005
The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes.
Nucleic Acids Res., 2005
CGHAnalyzer: a stand-alone software package for cancer genome analysis using array-based DNA copy number data.
Bioinform., 2005
MeSHer: identifying biological concepts in microarray assays based on PubMed references and MeSH terms.
Bioinform., 2005
2003
The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists.
Nucleic Acids Res., 2003
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets.
Bioinform., 2003
Knowledge-Based Access to the Bio-Medical Literature, Ontologically-Grounded Experiments for the TREC 2003 Genomics Track.
Proceedings of The Twelfth Text REtrieval Conference, 2003
Microarray gene expression data analysis - a beginner's guide.
Blackwell, ISBN: 978-1-40510-682-5, 2003
2002
2001
The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species.
Nucleic Acids Res., 2001
2000
The TIGR Gene Indices: reconstruction and representation of expressed gene sequences.
Nucleic Acids Res., 2000