John M. Greally

According to our database, John M. Greally authored at least 8 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Regulatory landscape enrichment analysis (RLEA): a computational toolkit for non-coding variant enrichment and cell type prioritization.

Samuel Rosean, Eric A. Sosa, Donal F. O'Shea, Srilakshmi M. Raj, Cathal Seoighe, John M. Greally

BMC Bioinform., December, 2024

2020

The shape of gene expression distributions matter: how incorporating distribution shape improves the interpretation of cancer transcriptomic data.

Laurence de Torrenté, Samuel E. Zimmerman, Masako Suzuki, Maximilian Christopeit, John M. Greally, Jessica Cara Mar

BMC Bioinform., 2020

AptCompare: optimized de novo motif discovery of RNA aptamers via HTS-SELEX.

Kevin R. Shieh, Christina Kratschmer, Keith E. Maier, John M. Greally, Matthew Levy, Aaron Golden

Bioinform., 2020

2019

Aneuvis: web-based exploration of numerical chromosomal variation in single cells.

Daniel G. Piqué, Grasiella A. Andriani, Elaine Maggi, Samuel E. Zimmerman, John M. Greally, Cristina Montagna, Jessica Cara Mar

BMC Bioinform., 2019

2017

SMITE: an R/Bioconductor package that identifies network modules by integrating genomic and epigenomic information.

N. Ari Wijetunga, Andrew D. Johnston, Ryo Maekawa, Fabien Delahaye, Netha Ulahannan, Kami Kim, John M. Greally

BMC Bioinform., 2017

2012

The Einstein Genome Gateway using WASP - A High Throughput Multi-Layered Life Sciences Portal for XSEDE.

Aaron Golden, Andrew S. McLellan, Robert A. Dubin, Qiang Jing, Pilib Ó Broin, David Moskowitz, Zhengdong Zhang, Masako Suzuki, Joseph Hargitai, R. Brent Calder, John M. Greally

Proceedings of the HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences, 2012

2009

A pipeline for the quantitative analysis of CG dinucleotide methylation using mass spectrometry.

Reid F. Thompson, Masako Suzuki, Kevin W. Lau, John M. Greally

Bioinform., 2009

2008

An analytical pipeline for genomic representations used for cytosine methylation studies.

Reid F. Thompson, Mark Reimers, Batbayar Khulan, Mathieu Gissot, Todd A. Richmond, Quan Chen, Xin Zheng, Kami Kim, John M. Greally

Bioinform., 2008