John Judkins

According to our database, John Judkins authored at least 11 papers between 2016 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

The Occupation Ontology (OccO): Building a Bridge between Global Occupational Standards.

John Beverley, Sam Smith, Matthew Diller, William D. Duncan, Jie Zheng, John W. Judkins, William R. Hogan, Robin McGill, Damion M. Dooley, Yongqun He

Proceedings of the Joint Ontology Workshops 2023 Episode IX: The Quebec Summer of Ontology co-located with the 13th International Conference on Formal Ontology in Information Systems (FOIS 2023), 2023

2022

VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center.

Beatrice Amos, Cristina Aurrecoechea, Matthieu Barba, Ana Barreto, Evelina Y. Basenko, Wojciech Bazant, Robert Belnap, Ann S. Blevins, Ulrike Böhme, John Brestelli, Brian P. Brunk, Mark J. Caddick, Danielle Callan, Lahcen I. Campbell, Mikkel B. Christensen, George K. Christophides, Kathryn Crouch, Kristina Davis, Jeremy D. DeBarry, Ryan Doherty, Yikun Duan, Michael Dunn, Dave Falke, Steve Fisher, Paul Flicek, Brett Fox, Bindu Gajria, Gloria I. Giraldo-Calderón, Omar S. Harb, Elizabeth Harper, Christiane Hertz-Fowler, Mark J. Hickman, Connor Howington, Sufen Hu, Jay C. Humphrey, John Iodice, Andrew R. Jones, John Judkins, Sarah A. Kelly, Jessica C. Kissinger, Dae Kun Kwon, Kristopher Lamoureux, Daniel Lawson, Wei Li, Kallie Lies, Disha Lodha, Jamie Long, Robert M. MacCallum, Gareth Maslen, Mary Ann McDowell, Jaroslaw Nabrzyski, David S. Roos, Samuel S. C. Rund, Stephanie wever Schulman, Achchuthan Shanmugasundram, Vasily Sitnik, Drew Spruill, David Starns, Christian J. Stoeckert Jr., Sheena Shah Tomko, Haiming Wang, Susanne Warrenfeltz, Robert Wieck, Paul A. Wilkinson, Lin Xu, Jie Zheng

Nucleic Acids Res., 2022

2021

Standardization of assay representation in the Ontology for Biomedical Investigations.

Randi Vita, Jie Zheng, Rebecca C. Jackson, Damion M. Dooley, James A. Overton, Mark A. Miller, Daniel C. Berrios, Richard H. Scheuermann, Yongqun He, Hande Küçük-McGinty, Mathias Brochhausen, Aisyah Yu Lin, Sagar B. Jain, Marcus C. Chibucos, John Judkins, Michelle G. Giglio, Irene Y. Feng, Gully Burns, Matthew H. Brush, Bjoern Peters, Christian J. Stoeckert Jr.

Database J. Biol. Databases Curation, 2021

2019

Development and Validation of a Controlled Vocabulary: An OWL Representation of Organizational Structures of Trauma Centers and Trauma Systems.

Joseph Utecht, Jane Ball, Stephen M. Bowman, Jimm Dodd, John Judkins, Robert T. Maxson, Rosemary Nabaweesi, Rohit Pradhan, Nels D. Sanddal, Robert J. Winchell, Mathias Brochhausen

Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

OWLmaker: An Application for Generating OWL Files from Tabular Text.

Jie Zheng, John Judkins, Christian J. Stoeckert Jr.

Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019

2018

Extending the DIDEO ontology to include entities from the natural product drug interaction domain of discourse.

John Judkins, Jessica Tay-Sontheimer, Richard D. Boyce, Mathias Brochhausen

J. Biomed. Semant., 2018

Developing User Personas to Aid in the Design of a User-Centered Natural Product-Drug Interaction Information Resource for Researchers.

Richard D. Boyce, Isabelle Ragueneau-Majlessi, Jingjing Yu, Jessica Sontheimer, Chris Kinsella, Eric Chou, Mathias Brochhausen, John Judkins, Brandon T. Gufford, Bruce Pinkleton, Rebecca L. Cooney, Mary Paine, Jeannine S. McCune

Proceedings of the AMIA 2018, 2018

2017

Formalizing Evidence Type Definitions for Drug-Drug Interaction Studies to Improve Evidence Base Curation.

Joseph Utecht, Mathias Brochhausen, John Judkins, Jodi Schneider, Richard D. Boyce

Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

Toward a reliable and interoperable public repository for natural product drug interaction study data.

Richard D. Boyce, Isabelle Ragueneau-Majlessi, Jingjing Yu, Jessica Sontheimer, Chris Kinsella, Mathias Brochhausen, John Judkins, Bruce Pinkleton, Rebecca L. Cooney, Mary Paine, Jeannine McCune

Proceedings of the AMIA 2017, 2017

2016

OOSTT: a Resource for Analyzing the Organizational Structures of Trauma Centers and Trauma Systems.

Joseph Utecht, John Judkins, Mathias Brochhausen, Terra Colvin Jr., J. Neil Otte, Nicholas Rogers, Robert Rose, Maria Alvi, Amanda Hicks, Jane Ball, Stephen M. Bowman, Robert T. Maxson, Rosemary Nabaweesi, Rohit Pradhan, Nels D. Sanddal, M. Eduard Tudoreanu, Robert J. Winchell

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

Easy Extraction of Terms and Definitions with OWL2TL.

John Judkins, Joseph Utecht, Mathias Brochhausen

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016