John J. Tyson
Orcid: 0000-0001-7560-6013
According to our database1,
John J. Tyson
authored at least 46 papers
between 1991 and 2022.
Collaborative distances:
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Bibliography
2022
Mathematical analysis of robustness of oscillations in models of the mammalian circadian clock.
PLoS Comput. Biol., 2022
2020
Misuse of the Michaelis-Menten rate law for protein interaction networks and its remedy.
PLoS Comput. Biol., 2020
Cell cycle control and environmental response by second messengers in Caulobacter crescentus.
BMC Bioinform., 2020
2019
Quasi-Newton Stochastic Optimization Algorithm for Parameter Estimation of a Stochastic Model of the Budding Yeast Cell Cycle.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
BMC Bioinform., 2019
2018
Simul., 2018
Dilution and titration of cell-cycle regulators may control cell size in budding yeast.
PLoS Comput. Biol., 2018
Modeling the interactions of sense and antisense Period transcripts in the mammalian circadian clock network.
PLoS Comput. Biol., 2018
Bioinform., 2018
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
2017
Predicting network modules of cell cycle regulators using relative protein abundance statistics.
BMC Syst. Biol., 2017
Bioinform., 2017
Hybrid ODE/SSA Model of the Budding Yeast Cell Cycle Control Mechanism with Mutant Case Study.
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017
2016
A Stochastic Model of the Yeast Cell Cycle Reveals Roles for Feedback Regulation in Limiting Cellular Variability.
PLoS Comput. Biol., 2016
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016
2015
Dynamical Localization of DivL and PleC in the Asymmetric Division Cycle of <i>Caulobacter crescentus</i>: A Theoretical Investigation of Alternative Models.
PLoS Comput. Biol., 2015
JigCell Run Manager (JC-RM): a tool for managing large sets of biochemical model parametrizations.
BMC Syst. Biol., 2015
Two-dimensional model of bipolar PopZ polymerization in <i>caulobacter crescentus</i>.
Proceedings of the 6th ACM Conference on Bioinformatics, 2015
2014
BMC Syst. Biol., 2014
Proceedings of the 2014 Summer Simulation Multiconference, 2014
2013
Potential Role of a Bistable Histidine Kinase Switch in the Asymmetric Division Cycle of <i>Caulobacter crescentus</i>.
PLoS Comput. Biol., 2013
J. Comput. Biol., 2013
Optimization and model reduction in the high dimensional parameter space of a budding yeast cell cycle model.
BMC Syst. Biol., 2013
2012
Network Topologies and Dynamics Leading to Endotoxin Tolerance and Priming in Innate Immune Cells.
PLoS Comput. Biol., 2012
A simple theoretical framework for understanding heterogeneous differentiation of CD4<sup>+</sup> T cells.
BMC Syst. Biol., 2012
2011
A Mathematical Model for the Reciprocal Differentiation of T Helper 17 Cells and Induced Regulatory T Cells.
PLoS Comput. Biol., 2011
2010
IEEE ACM Trans. Comput. Biol. Bioinform., 2010
2009
Temporal Controls of the Asymmetric Cell Division Cycle in <i>Caulobacter crescentus</i>.
PLoS Comput. Biol., 2009
Model aggregation: a building-block approach to creating large macromolecular regulatory networks.
Bioinform., 2009
2008
A Quantitative Study of the Division Cycle of <i>Caulobacter crescentus</i> Stalked Cells.
PLoS Comput. Biol., 2008
Deterministic parallel global parameter estimation for a model of the budding yeast cell cycle.
J. Glob. Optim., 2008
2007
Simul., 2007
Modeling Networks of Coupled Enzymatic Reactions Using the Total Quasi-Steady State Approximation.
PLoS Comput. Biol., 2007
Proceedings of the 2007 Spring Simulation Multiconference, 2007
2006
The JigCell Model Builder: A Spreadsheet Interface for Creating Biochemical Reaction Network Models.
IEEE ACM Trans. Comput. Biol. Bioinform., 2006
The role of composition and aggregation in modeling macromolecular regulatory networks.
Proceedings of the Winter Simulation Conference WSC 2006, 2006
Proceedings of the Winter Simulation Conference WSC 2006, 2006
2005
J. Comput. Biol., 2005
2004
Proceedings of the 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), 2004
2000
SIAM J. Appl. Math., 2000
1992
1991
Third Generation Cellular Automation for Modeling Excitable Media.
Proceedings of the Fifth SIAM Conference on Parallel Processing for Scientific Computing, 1991