John H. Phan

According to our database, John H. Phan authored at least 39 papers between 2004 and 2016.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2016

A multi-modal graph-based semi-supervised pipeline for predicting cancer survival.

Hamid Reza Hassanzadeh, John H. Phan, May D. Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Integration of multi-modal biomedical data to predict cancer grade and patient survival.

John H. Phan, Ryan Hoffman, Sonal Kothari, Po-Yen Wu, May D. Wang

Proceedings of the 2016 IEEE-EMBS International Conference on Biomedical and Health Informatics, 2016

2015

Detection of blur artifacts in histopathological whole-slide images of endomyocardial biopsies.

Hang Wu, John H. Phan, Ajay K. Bhatia, Caitlin A. Cundiff, Bahig M. Shehata, May D. Wang

Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2015

Effect of low-expression gene filtering on detection of differentially expressed genes in RNA-seq data.

Ying Sha, John H. Phan, May D. Wang

Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2015

A semi-supervised method for predicting cancer survival using incomplete clinical data.

Hamid Reza Hassanzadeh, John H. Phan, May D. Wang

Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2015

Integration of multimodal RNA-seq data for prediction of kidney cancer survival.

Matt Schwartz, Martin Park, John H. Phan, May D. Wang

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

The impact of RNA-seq aligners on gene expression estimation.

Cheng Yang, Po-Yen Wu, Li Tong, John H. Phan, May D. Wang

Proceedings of the 6th ACM Conference on Bioinformatics, 2015

2014

Removing Batch Effects From Histopathological Images for Enhanced Cancer Diagnosis.

Sonal Kothari, John H. Phan, Todd H. Stokes, Adeboye O. Osunkoya, Andrew N. Young, May D. Wang

IEEE J. Biomed. Health Informatics, 2014

The impact of RNA-seq alignment pipeline on detection of differentially expressed genes.

Cheng Yang, Po-Yen Wu, John H. Phan, May D. Wang

Proceedings of the 2014 IEEE Global Conference on Signal and Information Processing, 2014

Investigation of factors affecting RNA-seq gene expression calls.

Sahar Harati, John H. Phan, May D. Wang

Proceedings of the 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2014

omniClassifier: a desktop grid computing system for big data prediction modeling.

John H. Phan, Sonal Kothari, May D. Wang

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013

omniBiomarker: A Web-Based Application for Knowledge-Driven Biomarker Identification.

John H. Phan, Andrew N. Young, May Dongmei Wang

IEEE Trans. Biomed. Eng., 2013

Review: Pathology imaging informatics for quantitative analysis of whole-slide images.

Sonal Kothari, John H. Phan, Todd H. Stokes, May D. Wang

J. Am. Medical Informatics Assoc., 2013

Histological image classification using biologically interpretable shape-based features.

Sonal Kothari, John H. Phan, Andrew N. Young, May D. Wang

BMC Medical Imaging, 2013

Assessing the impact of human genome annotation choice on RNA-seq expression estimates.

Po-Yen Wu, John H. Phan, May D. Wang

BMC Bioinform., 2013

An approach for assessing RNA-seq quantification algorithms in replication studies.

Po-Yen Wu, John H. Phan, May D. Wang

Proceedings of the 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, 2013

Benchmarking RNA-Seq quantification tools.

Raghu Chandramohan, Po-Yen Wu, John H. Phan, May D. Wang

Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2013

Exploration of genomic, proteomic, and histopathological image data integration methods for clinical prediction.

Anjaly Poruthoor, John H. Phan, Sonal Kothari, May D. Wang

Proceedings of the 2013 IEEE China Summit and International Conference on Signal and Information Processing, 2013

Systematic Assessment of RNA-Seq Quantification Tools Using Simulated Sequence Data.

Raghu Chandramohan, Po-Yen Wu, John H. Phan, May D. Wang

Proceedings of the ACM Conference on Bioinformatics, 2013

2012

Cardiovascular Genomics: A Biomarker Identification Pipeline.

John H. Phan, Chang F. Quo, May Dongmei Wang

IEEE Trans. Inf. Technol. Biomed., 2012

Win percentage: a novel measure for assessing the suitability of machine classifiers for biological problems.

R. Mitchell Parry, John H. Phan, May D. Wang

BMC Bioinform., 2012

Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities.

Chang F. Quo, Chanchala Kaddi, John H. Phan, Amin Zollanvari, Mingqing Xu, May D. Wang, Gil Alterovitz

Briefings Bioinform., 2012

Improving the flexibility of RNA-Seq data analysis pipelines.

John H. Phan, Po-Yen Wu, May D. Wang

Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012

Scale normalization of histopathological images for batch invariant cancer diagnostic models.

Sonal Kothari, John H. Phan, May D. Wang

Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2012

The effect of human genome annotation complexity on RNA-Seq gene expression quantification.

Po-Yen Wu, John H. Phan, May D. Wang

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

Biological interpretation of morphological patterns in histopathological whole-slide images.

Sonal Kothari, Adeboye O. Osunkoya, John H. Phan, May D. Wang

Proceedings of the ACM International Conference on Bioinformatics, 2012

2011

caCORRECT2: Improving the accuracy and reliability of microarray data in the presence of artifacts.

Richard A. Moffitt, Qiqin Yin-Goen, Todd H. Stokes, R. Mitchell Parry, James H. Torrance, John H. Phan, Andrew N. Young, May D. Wang

BMC Bioinform., 2011

Automatic batch-invariant color segmentation of histological cancer images.

Sonal Kothari, John H. Phan, Richard A. Moffitt, Todd H. Stokes, Shelby E. Hassberger, Qaiser Chaudry, Andrew N. Young, May D. Wang

Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Exploring the feasibility of next-generation sequencing and microarray data meta-analysis.

Po-Yen Wu, John H. Phan, May D. Wang

Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

Evaluation of normalization methods for RNA-Seq gene expression estimation.

Po-Yen Wu, John H. Phan, Fengfeng Zhou, May D. Wang

Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

Histological Image Feature Mining Reveals Emergent Diagnostic Properties for Renal Cancer.

Sonal Kothari, John H. Phan, Andrew N. Young, May D. Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

2010

A distributed system for fast alignment of next-generation sequencing data.

Jaydeep K. Srimani, Po-Yen Wu, John H. Phan, May D. Wang

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

2009

Improving the Efficiency of Biomarker Identification Using Biological Knowledge.

John H. Phan, Qiqin Yin-Goen, Andrew N. Young, May D. Wang

Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

2008

Improving Microarray Sample Size Using Bootstrap Data Combination.

John H. Phan, Richard A. Moffitt, Andrea B. Barrett, May D. Wang

Proceedings of the International Multisymposiums on Computer and Computational Sciences, 2008

2007

Estimating Classification Error to Identify Biomarkers in Time Series Expression Data.

John H. Phan, May D. Wang

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

Evolving Biological Behavior in Gene-Based Cellular Simulations.

John H. Phan, Richard A. Moffitt, Todd H. Stokes, May D. Wang

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006

Bio-Nano-Informatics: An Integrated Information Management System for Personalized Oncology.

Todd H. Stokes, John H. Phan, Chang F. Quo, Shuming Nie, May D. Wang

Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006

Selecting Clinically-Driven Biomarkers for Cancer Nanotechnology.

John H. Phan, Andrew N. Young, May D. Wang

Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006

2004

Development of a Knowledge-Based Multi-Scheme Cancer Microarray Data Analysis System.

John H. Phan, Chang F. Quo, Kejiao Guo, Weimin Feng, Geoffrey Wang, May D. Wang

Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004