John Gordon Burleigh

According to our database, John Gordon Burleigh authored at least 27 papers between 2007 and 2018.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2018

A Natural Language Processing Pipeline to Extract Phenotypic Data from Formal Taxonomic Descriptions with a Focus on Flagellate Plants.

Lorena Endara, J. Gordon Burleigh, Laurel Cooper, Pankaj Jaiswal, Marie-Angélique Laporte, Hong Cui

Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018

2015

MulRF: a software package for phylogenetic analysis using multi-copy gene trees.

Ruchi Chaudhary, David Fernández-Baca, John Gordon Burleigh

Bioinform., 2015

Constructing and Employing Tree Alignment Graphs for Phylogenetic Synthesis.

Ruchi Chaudhary, David Fernández-Baca, J. Gordon Burleigh

Proceedings of the Algorithms for Computational Biology, 2015

2014

Extracting phylogenetic signals from multi-labeled gene trees and its significance for species tree construction.

Ryan Cobb, Rasha Elhesha, J. Gordon Burleigh, Tamer Kahveci

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013

Efficient Algorithms for Knowledge-Enhanced Supertree and Supermatrix Phylogenetic Problems.

André Wehe, J. Gordon Burleigh, Oliver Eulenstein

IEEE ACM Trans. Comput. Biol. Bioinform., 2013

Stability analysis of phylogenetic trees.

Saad I. Sheikh, Tamer Kahveci, Sanjay Ranka, J. Gordon Burleigh

Bioinform., 2013

Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance.

Ruchi Chaudhary, John Gordon Burleigh, David Fernández-Baca

Algorithms Mol. Biol., 2013

2012

Fast Local Search for Unrooted Robinson-Foulds Supertrees.

Ruchi Chaudhary, J. Gordon Burleigh, David Fernández-Baca

IEEE ACM Trans. Comput. Biol. Bioinform., 2012

A scalable method for identifying frequent subtrees in sets of large phylogenetic trees.

Avinash Ramu, Tamer Kahveci, J. Gordon Burleigh

BMC Bioinform., 2012

Consensus properties for the deep coalescence problem and their application for scalable tree search.

Harris T. Lin, J. Gordon Burleigh, Oliver Eulenstein

BMC Bioinform., 2012

Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence.

Ruchi Chaudhary, J. Gordon Burleigh, Oliver Eulenstein

BMC Bioinform., 2012

Algorithms for Knowledge-Enhanced Supertrees.

André Wehe, J. Gordon Burleigh, Oliver Eulenstein

Proceedings of the Bioinformatics Research and Applications - 8th International Symposium, 2012

GTP Supertrees from Unrooted Gene Trees: Linear Time Algorithms for NNI Based Local Searches.

Pawel Górecki, J. Gordon Burleigh, Oliver Eulenstein

Proceedings of the Bioinformatics Research and Applications - 8th International Symposium, 2012

2011

Maximum likelihood models and algorithms for gene tree evolution with duplications and losses.

Pawel Górecki, J. Gordon Burleigh, Oliver Eulenstein

BMC Bioinform., 2011

An ILP solution for the gene duplication problem.

Wen-Chieh Chang, J. Gordon Burleigh, David Fernández-Baca, Oliver Eulenstein

BMC Bioinform., 2011

The Deep Coalescence Consensus Tree Problem is Pareto on Clusters.

Harris T. Lin, J. Gordon Burleigh, Oliver Eulenstein

Proceedings of the Bioinformatics Research and Applications - 7th International Symposium, 2011

Algorithms for Rapid Error Correction for the Gene Duplication Problem.

Ruchi Chaudhary, J. Gordon Burleigh, Oliver Eulenstein

Proceedings of the Bioinformatics Research and Applications - 7th International Symposium, 2011

2010

Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models.

Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulenstein

BMC Bioinform., 2010

Robinson-Foulds Supertrees.

Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulenstein, David Fernández-Baca

Algorithms Mol. Biol., 2010

Scaling the Gene Duplication Problem Towards the Tree of Life.

André Wehe, John Gordon Burleigh

Proceedings of the ISCA 2nd International Conference on Bioinformatics and Computational Biology, 2010

Triplet-Supertrees constructed from Minimum Triplet Presentations.

Max Homilius, John Gordon Burleigh, Oliver Eulenstein

Proceedings of the ISCA 2nd International Conference on Bioinformatics and Computational Biology, 2010

Inferring species trees from gene duplication episodes.

J. Gordon Burleigh, Mukul S. Bansal, Oliver Eulenstein, Todd J. Vision

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009

Locating Large-Scale Gene Duplication Events through Reconciled Trees: Implications for Identifying Ancient Polyploidy Events in Plants.

John Gordon Burleigh, Mukul S. Bansal, André Wehe, Oliver Eulenstein

J. Comput. Biol., 2009

Triplet supertree heuristics for the tree of life.

Harris T. Lin, J. Gordon Burleigh, Oliver Eulenstein

BMC Bioinform., 2009

2008

DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony.

André Wehe, Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulenstein

Bioinform., 2008

Locating Multiple Gene Duplications through Reconciled Trees.

J. Gordon Burleigh, Mukul S. Bansal, André Wehe, Oliver Eulenstein

Proceedings of the Research in Computational Molecular Biology, 2008

2007

Heuristics for the Gene-Duplication Problem: A <i>Theta</i> ( <i>n</i> ) Speed-Up for the Local Search.

Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulenstein, André Wehe

Proceedings of the Research in Computational Molecular Biology, 2007