John A. Rhodes

According to our database, John A. Rhodes authored at least 21 papers between 2006 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2025

Identifying circular orders for blobs in phylogenetic networks.

John A. Rhodes, Hector Baños, Jingcheng Xu, Cécile Ané

Adv. Appl. Math., 2025

2024

TINNiK: inference of the tree of blobs of a species network under the coalescent model.

Elizabeth S. Allman, Hector Baños, Jonathan D. Mitchell, John A. Rhodes

Algorithms Mol. Biol., December, 2024

Phylogenomic Models from Tree Symmetries.

Elizabeth S. Allman, Colby Long, John A. Rhodes

SIAM J. Appl. Algebra Geom., March, 2024

2023

Parameter Identifiability of a Multitype Pure-Birth Model of Speciation.

Dakota Dragomir, Elizabeth S. Allman, John A. Rhodes

J. Comput. Biol., March, 2023

Testing Multispecies Coalescent Simulators Using Summary Statistics.

Elizabeth S. Allman, Hector Baños, John A. Rhodes

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

Inferring Phylogenetic Networks Using Algebraic Geometry.

Elizabeth Gross, John A. Rhodes

XRDS, 2023

2021

Parameter Identifiability for a Profile Mixture Model of Protein Evolution.

Samaneh Yourdkhani, Elizabeth S. Allman, John A. Rhodes

J. Comput. Biol., 2021

MSCquartets 1.0: quartet methods for species trees and networks under the multispecies coalescent model in R.

John A. Rhodes, Hector Baños, Jonathan D. Mitchell, Elizabeth S. Allman

Bioinform., 2021

2020

Topological Metrizations of Trees, and New Quartet Methods of Tree Inference.

John A. Rhodes

IEEE ACM Trans. Comput. Biol. Bioinform., 2020

2019

Species Tree Inference from Genomic Sequences Using the Log-Det Distance.

Elizabeth S. Allman, Colby Long, John A. Rhodes

SIAM J. Appl. Algebra Geom., 2019

NANUQ: a method for inferring species networks from gene trees under the coalescent model.

Elizabeth S. Allman, Hector Baños, John A. Rhodes

Algorithms Mol. Biol., 2019

2018

Species Tree Inference from Gene Splits by Unrooted STAR Methods.

Elizabeth S. Allman, James H. Degnan, John A. Rhodes

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

2017

Statistically Consistent <i>k</i>-mer Methods for Phylogenetic Tree Reconstruction.

Elizabeth S. Allman, John A. Rhodes, Seth Sullivant

J. Comput. Biol., 2017

2014

A Semialgebraic Description of the General Markov Model on Phylogenetic Trees.

Elizabeth S. Allman, John A. Rhodes, Amelia Taylor

SIAM J. Discret. Math., 2014

2013

Tensor Rank, Invariants, Inequalities, and Applications.

Elizabeth S. Allman, Peter D. Jarvis, John A. Rhodes, Jeremy G. Sumner

SIAM J. Matrix Anal. Appl., 2013

Species Tree Inference by the STAR Method and Its Generalizations.

Elizabeth S. Allman, James H. Degnan, John A. Rhodes

J. Comput. Biol., 2013

2011

Identifiability of Two-Tree Mixtures for Group-Based Models.

Elizabeth S. Allman, Sonja Petrovic, John A. Rhodes, Seth Sullivant

IEEE ACM Trans. Comput. Biol. Bioinform., 2011

2009

The Identifiability of Covarion Models in Phylogenetics.

Elizabeth S. Allman, John A. Rhodes

IEEE ACM Trans. Comput. Biol. Bioinform., 2009

2008

Phylogenetic ideals and varieties for the general Markov model.

Elizabeth S. Allman, John A. Rhodes

Adv. Appl. Math., 2008

2006

Phylogenetic invariants for stationary base composition.

Elizabeth S. Allman, John A. Rhodes

J. Symb. Comput., 2006

The Identifiability of Tree Topology for Phylogenetic Models, Including Covarion and Mixture Models.

Elizabeth S. Allman, John A. Rhodes

J. Comput. Biol., 2006