Johannes Lotz

According to our database, Johannes Lotz authored at least 18 papers between 2013 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2024

Overcoming data scarcity in biomedical imaging with a foundational multi-task model.

Raphael Schäfer, Till Nicke, Henning Höfener, Annkristin Lange, Dorit Merhof, Friedrich Feuerhake, Volkmar Schulz, Johannes Lotz, Fabian Kiessling

Nat. Comput. Sci., July, 2024

The ACROBAT 2022 challenge: Automatic registration of breast cancer tissue.

Philippe Weitz, Masi Valkonen, Leslie Solorzano, Circe Carr, Kimmo Kartasalo, Constance Boissin, Sonja Koivukoski, Aino Kuusela, Dusan Rasic, Yanbo Feng, Sandra Kristiane Sinius Pouplier, Abhinav Sharma, Kajsa Ledesma Eriksson, Stephanie Robertson, Christian Marzahl, Chandler D. Gatenbee, Alexander R. A. Anderson, Marek Wodzinski, Artur Jurgas, Niccolò Marini, Manfredo Atzori, Henning Müller, Daniel Budelmann, Nick Weiss, Stefan Heldmann, Johannes Lotz, Jelmer M. Wolterink, Bruno De Santi, Abhijeet Patil, Amit Sethi, Satoshi Kondo, Satoshi Kasai, Kousuke Hirasawa, Mahtab Farrokh, Neeraj Kumar, Russell Greiner, Leena Latonen, Anne-Vibeke Laenkholm, Johan Hartman, Pekka Ruusuvuori, Mattias Rantalainen

Medical Image Anal., 2024

Tissue Concepts: supervised foundation models in computational pathology.

Till Nicke, Raphael Schäfer, Henning Höfener, Friedrich Feuerhake, Dorit Merhof, Fabian Kiessling, Johannes Lotz

CoRR, 2024

Utnetpara: A Hybrid CNN-Transformer Architecture with Multi-Scale Fusion for Whole-Slide Image Segmentation.

Boqiang Huang, Jiayu Ying, Ruizhi Lyu, Nadine S. Schaadt, Barbara Mara Klinkhammer, Peter Boor, Johannes Lotz, Friedrich Feuerhake, Dorit Merhof

Proceedings of the IEEE International Symposium on Biomedical Imaging, 2024

2023

Deep feature based cross-slide registration.

Ruqayya Awan, Shan E Ahmed Raza, Johannes Lotz, Nick Weiss, Nasir M. Rajpoot

Comput. Medical Imaging Graph., March, 2023

2022

Deep Learning based Prediction of MSI in Colorectal Cancer via Prediction of the Status of MMR Markers.

Ruqayya Awan, Mohammed Nimir, Shan E Ahmed Raza, Johannes Lotz, David R. J. Snead, Andrew Robison, Nasir M. Rajpoot

CoRR, 2022

2021

HyReCo - Hybrid re-stained and consecutive histological serial sections.

Jeroen van der Laak, Johannes Lotz, Nick Weiss, Stefan Heldmann

Dataset, December, 2021

High-resolution Image Registration of Consecutive and Re-stained Sections in Histopathology.

Johannes Lotz, Nick Weiss, Jeroen van der Laak, Stefan Heldmann

CoRR, 2021

2020

ANHIR: Automatic Non-Rigid Histological Image Registration Challenge.

Jirí Borovec, Jan Kybic, Ignacio Arganda-Carreras, Dmitry V. Sorokin, Gloria Bueno, Alexander V. Khvostikov, Spyridon Bakas, Eric I-Chao Chang, Stefan Heldmann, Kimmo Kartasalo, Leena Latonen, Johannes Lotz, Michelle Noga, Sarthak Pati, Kumaradevan Punithakumar, Pekka Ruusuvuori, Andrzej Skalski, Nazanin Tahmasebi, Masi Valkonen, Ludovic Venet, Yizhe Wang, Nick Weiss, Marek Wodzinski, Yu Xiang, Yan Xu, Yan Yan, Paul A. Yushkevich, Shengyu Zhao, Arrate Muñoz-Barrutia

IEEE Trans. Medical Imaging, 2020

Virtual staining for mitosis detection in Breast Histopathology.

Caner Mercan, Germonda Reijnen-Mooij, David Tellez Martin, Johannes Lotz, Nick Weiss, Marcel van Gerven, Francesco Ciompi

CoRR, 2020

Virtual Staining for Mitosis Detection in Breast Histopathology.

Caner Mercan, G. C. A. M. Mooij, David Tellez, Johannes Lotz, Nick Weiss, Marcel van Gerven, Francesco Ciompi

Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

2019

Robust, fast and accurate: a 3-step method for automatic histological image registration.

Johannes Lotz, Nick Weiss, Stefan Heldmann

CoRR, 2019

2018

Epithelium segmentation using deep learning in H&E-stained prostate specimens with immunohistochemistry as reference standard.

Wouter Bulten, Péter Bándi, Jeffrey Hoven, Rob van de Loo, Johannes Lotz, Nick Weiss, Jeroen van der Laak, Bram van Ginneken, Christina A. Hulsbergen van de Kaa, Geert Litjens

CoRR, 2018

2016

Patch-Based Nonlinear Image Registration for Gigapixel Whole Slide Images.

Johannes Lotz, Janine Olesch, Benedikt Müller, Thomas Polzin, P. Galuschka, J. M. Lotz, Stefan Heldmann, Hendrik Laue, Margarita Gonzalez-Vallinas, Arne Warth, Bernd Lahrmann, Niels Grabe, Oliver Sedlaczek, Kai Breuhahn, Jan Modersitzki

IEEE Trans. Biomed. Eng., 2016

2015

Towards MR-guided biopsy outside the MR-scanner: information fusion based on simultaneous ultrasound-MR imaging and real-time motion tracking.

Matthias Günther, Tobias Bartscherer, Joachim Georgii, Holger Hewener, Till Kipshagen, Darko Ojdanic, Bojan Kovec, Johannes Lotz, Janine Olesch, Sven Rothlübbers, Michael Schwenke, Daniel Speicher, Steffen H. Tretbar

Proceedings of the 14. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie, 2015

Multimodal Image Registration in Digital Pathology Using Cell Nuclei Densities.

Nick Weiss, Johannes Lotz, Jan Modersitzki

Proceedings of the Bildverarbeitung für die Medizin 2015, Algorithmen - Systeme, 2015

2014

Zooming in: high resolution 3D reconstruction of differently stained histological whole slide images.

Johannes Lotz, Judith Berger, Benedikt Müller, Kai Breuhahn, Niels Grabe, Stefan Heldmann, André Homeyer, Bernd Lahrmann, Hendrik Laue, Janine Olesch, Michael Schwier, Oliver Sedlaczek, Arne Warth

Proceedings of the Medical Imaging 2014: Digital Pathology, 2014

2013

Real time motion analysis in 4D medical imaging using conditional density propagation.

Johannes Lotz, Bernd Fischer, Janine Olesch, Matthias Günther

Proceedings of the Medical Imaging 2013: Image Processing, 2013